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[187404_at]

Description B0416.2 /REP_DB=WormBase Gene ID /WP=CE02432 /TR=SW:Q11070 /GB=AAG38879.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 2.6
(-3)
A 		2.6
(-3)
A 		4.8
(-2.9)
A 		197.4
(3)
P 		195
B 2.6
(-3)
A 		3.2
(-3)
A 		2
(-3)
A 		221.4
(3)
P 		219
C 1.8
(-3)
A 		2.9
(-3)
A 		1.5
(-3)
A 		336.5
(3)
P 		335
avr 2.3
(-3) 		2.9
(-3) 		2.8
(-3) 		251.8
(3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.7
(-1.4)
A 		2.7
(-3)
A 		13.8
(3)
A 		2.8
(-2.9)
A 		7.2
(-0.6)
A 		5.2
(-1.6)
A 		11
B 5.9
(0.7)
A 		2.8
(-2.4)
A 		8.2
(3)
A 		4.4
(-0.8)
A 		4.5
(-0.7)
A 		2.2
(-3)
A 		6
C 6.5
(0.2)
A 		10.2
(3)
A 		2.3
(-3)
A 		6
(-0.2)
A 		4.8
(-1.1)
A 		10.2
(3)
A 		8
avr 6
(-0.4) 		5.2
(-1.7) 		8.1
(3) 		4.4
(-3) 		5.5
(-1.2) 		5.9
(-0.6) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 1
(-2.9)
A 		0.6
(-3)
A 		1.2
(-2.9)
A 		28.9
(3)
P 		28
B 0.8
(-3)
A 		0.8
(-3)
A 		0.5
(-3)
A 		47.2
(3)
P 		47
C 0.6
(-3)
A 		0.8
(-3)
A 		0.5
(-3)
A 		56.7
(3)
P 		56
avr 0.8
(-3) 		0.7
(-3) 		0.7
(-3) 		44.3
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1
(-2.2)
A 		1
(-2.2)
A 		3
(3)
A 		0.7
(-3)
A 		2.2
(0.9)
A 		1.3
(-1.4)
A 		2
B 2.1
(3)
A 		0.9
(-2.5)
A 		2
(2.5)
A 		1.2
(-1.2)
A 		1.8
(1.6)
A 		0.8
(-3)
A 		1
C 2.4
(0.9)
A 		3.1
(2.4)
A 		0.6
(-3)
A 		1.2
(-1.7)
A 		1.6
(-0.9)
A 		3.4
(3)
A 		3
avr 1.8
(2.3) 		1.7
(1.7) 		1.9
(3) 		1
(-3) 		1.9
(3) 		1.8
(2.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16290
Sequence Type Exemplar sequence
Representative Public ID B0416.2 NCBI
Target Description B0416.2 /REP_DB=WormBase Gene ID /WP=CE02432 /TR=SW:Q11070 /GB=AAG38879.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077167 NCBI Caenorhabditis elegans B0416.2 (B0416.2) mRNA, complete cds. 11/11 None
SNAP00000036825 ENSEMBL cdna:SNAP chromosome:CEL140:X:9299189:9300016:1 11/11 None
GENEFINDER00000036831 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9299189:9300016:1 11/11 None
B0416.2 ENSEMBL cdna:known chromosome:CEL140:X:9299189:9300016:1 gene:B0416.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9299188-9300016(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0416.2
Entrez Gene 181984 Entrez gene
SwissProt Q11070 EMBL-EBI
WormBase CE02432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG38879 Hypothetical protein B0416.2 [Caenorhabditis elegans] ref|NP_509568.1| B0416.2 [Caenorhabditis elegans] sp|Q11070|YT42_CAEEL Hypothetical protein B0416.2 in chromosome X precursor 6.0E-80
blast CAE69848 Hypothetical protein CBG16176 [Caenorhabditis briggsae] 4.0E-36
blast CAA94854 Hypothetical protein ZK856.6 [Caenorhabditis elegans] ref|NP_505621.1| ZK856.6 [Caenorhabditis elegans] 4.0E-34
Sequence
Target Sequence 
>C. ELEGANS:187404_AT
ctcttgttgctcaaagctcacaattggaatctgtcactcggaagccaaaaccatttttct
tggtgaaaaagtcaatgttggttggaatgagtgaaaccactgaagaagtatgccaaacag
tggttcttcataactatgaaccagtgtatggacatttgatcaacggaagccttgtggaaa
ttctgcaagccagtggtcacaaattttcaaaaacacatgttcaatgtcttgaagaggacc
gtccgtcttgtcacggcgtcaaagatgacatgtatattagcgagtgcgtaacagtgtacg
aaaatgcaaacacaatggtccgactcttcaactcatttggaccgtacagattaggaacga
ttcggatcccgatcctttgcgaatgtcgtctgagacgccagtatcgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTGTTGCTCAAAGCTCACAATT 656 229 71 Antisense
GGAATCTGTCACTCGGAAGCCAAAA 42 533 96 Antisense
ATGCCAAACAGTGGTTCTTCATAAC 293 41 180 Antisense
GGAAATTCTGCAAGCCAGTGGTCAC 333 527 246 Antisense
TGAAGAGGACCGTCCGTCTTGTCAC 136 575 300 Antisense
TCCGTCTTGTCACGGCGTCAAAGAT 321 595 312 Antisense
TGCAAACACAATGGTCCGACTCTTC 496 577 375 Antisense
CCGACTCTTCAACTCATTTGGACCG 528 263 390 Antisense
AGGAACGATTCGGATCCCGATCCTT 29 53 423 Antisense
CCGATCCTTTGCGAATGTCGTCTGA 592 261 439 Antisense
GTCGTCTGAGACGCCAGTATCGTGA 595 471 455 Antisense
Sequence Source Affymetrix Proprietary Database