[Home] | [Total List]

[187399_at]

Description B0563.1 /REP_DB=WormBase Gene ID /WP=CE02439 /TR=SW:Q11078 /GB=AAA68323.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 19      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 25.9
(-1.6)
A 		65.3
(3)
A 		13.8
(-3)
A 		16.5
(-2.7)
A 		52
B 36
(3)
A 		14.2
(-3)
A 		20.1
(-1.4)
A 		30.3
(1.4)
A 		22
C 12.2
(-2.5)
A 		12.3
(-2.5)
A 		6.6
(-3)
A 		81
(3)
A 		74
avr 24.7
(-0.7) 		30.6
(0.5) 		13.5
(-3) 		42.6
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 47.8
(-1.5)
A 		29.3
(-2.3)
A 		12.5
(-3)
A 		49.3
(-1.4)
A 		70.1
(-0.5)
A 		149.6
(3)
A 		137
B 51.6
(-0.2)
A 		37.2
(-1.2)
A 		11.1
(-3)
A 		39.3
(-1.1)
A 		24.8
(-2.1)
A 		98.4
(3)
P 		87
C 14.9
(-3)
A 		62.6
(-0.6)
A 		16.2
(-2.9)
A 		37.3
(-1.9)
A 		58.4
(-0.8)
A 		133
(3)
P 		118
avr 38.1
(-1.7) 		43
(-1.4) 		13.3
(-3) 		42
(-1.5) 		51.1
(-1) 		127
(3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.4
(0.6)
A 		14.2
(3)
A 		3.6
(-2.4)
A 		2.4
(-3)
A 		12
B 11.5
(3)
A 		3.5
(-3)
A 		4.6
(-2.2)
A 		6.5
(-0.8)
A 		8
C 4
(-2.1)
A 		3.5
(-2.4)
A 		2.3
(-3)
A 		13.7
(3)
A 		11
avr 8.3
(3) 		7.1
(1.5) 		3.5
(-3) 		7.5
(2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 8.8
(-1.9)
A 		10.4
(-1.6)
A 		2.7
(-3)
A 		12.5
(-1.3)
A 		21.2
(0.3)
A 		36.4
(3)
A 		34
B 18
(-0.3)
A 		12.4
(-1.3)
A 		2.7
(-3)
A 		10.4
(-1.6)
A 		10.1
(-1.7)
A 		36.7
(3)
P 		34
C 5.5
(-2.8)
A 		19.1
(-0.8)
A 		4.1
(-3)
A 		7.5
(-2.5)
A 		18.9
(-0.8)
A 		44.5
(3)
P 		40
avr 10.8
(-1.7) 		14
(-1.2) 		3.2
(-3) 		10.1
(-1.9) 		16.7
(-0.8) 		39.2
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17208
Sequence Type Exemplar sequence
Representative Public ID B0563.1 NCBI
Target Description B0563.1 /REP_DB=WormBase Gene ID /WP=CE02439 /TR=SW:Q11078 /GB=AAA68323.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077146 NCBI Caenorhabditis elegans B0563.1 (B0563.1) mRNA, complete cds. 11/11 None
GENEFINDER00000037342 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9171495:9172137:1 11/11 None
B0563.1 ENSEMBL cdna:known chromosome:CEL140:X:9171495:9172137:1 gene:B0563.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037337 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9171493-9172136(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0563.1
Entrez Gene 182038 Entrez gene
SwissProt Q11078 EMBL-EBI
WormBase CE02439 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68323 Hypothetical protein B0563.1 [Caenorhabditis elegans] ref|NP_509547.1| B0563.1 [Caenorhabditis elegans] sp|Q11078|YT61_CAEEL Hypothetical protein B0563.1 in chromosome X 1.0E-83
blast CAE57269 Hypothetical protein CBG00168 [Caenorhabditis briggsae] 7.0E-22
blast CAE57268 Hypothetical protein CBG00167 [Caenorhabditis briggsae] 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:187399_AT
tcctttacttcaaccgccaaatggtcctgccctaataaattgaaaatctcatctgaggac
attcgaaacttcaaggacacacttattgctatgaaaggaagaagaatgaatgcgactgcc
atgcgcttgctcactaatgaaaccaactacaaagtcacaattgaagtgtccacaaaagct
atccgggcattgaagaaggttatccgtcgtggtgtcgggcaataccaacctggttccaag
acggaccaactcatcacttcattcaaagaagtaaaacaagaatacgatgagatgattttg
aaaatggacatcaaaatggtaccttcaaaagctgattacgtcattgaatgctggctcaaa
aaagatgctgccgagaaagctgccaaagaatcaaaagatcgcaaagccttgaagaacgct
gctaggaaagctgaaaaaaacgcacacgaagaatcatcatatttcagagtggatgaccca
gaaccagaaccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTTACTTCAACCGCCAAATGGT 14 579 40 Antisense
GCCAAATGGTCCTGCCCTAATAAAT 10 275 55 Antisense
ATGAATGCGACTGCCATGCGCTTGC 21 45 145 Antisense
ATGCGCTTGCTCACTAATGAAACCA 530 41 160 Antisense
GTGTCCACAAAAGCTATCCGGGCAT 224 483 205 Antisense
GAAGGTTATCCGTCGTGGTGTCGGG 27 333 234 Antisense
TGTCGGGCAATACCAACCTGGTTCC 682 555 252 Antisense
CCTGGTTCCAAGACGGACCAACTCA 322 245 268 Antisense
GACCAACTCATCACTTCATTCAAAG 708 383 283 Antisense
AGATGCTGCCGAGAAAGCTGCCAAA 524 67 402 Antisense
TGGATGACCCAGAACCAGAACCACA 17 551 509 Antisense
Sequence Source Affymetrix Proprietary Database