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[187398_s_at]

Description F55F8.3 /REP_DB=WormBase Gene ID /WP=CE11192 /TR=SW:P91341 /GB=AAB37807.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 82      6grp_total > 56      4grp_total > 54      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 500.6
(3)
P 		419.9
(0.5)
P 		341.9
(-1.9)
P 		305.8
(-3)
P 		195
B 451.4
(3)
P 		372.7
(0.2)
P 		426
(2.1)
P 		284.2
(-3)
P 		167
C 615.6
(3)
P 		426.8
(-2.5)
P 		418
(-2.8)
P 		410.5
(-3)
P 		205
avr 522.5
(3) 		406.5
(-0.7) 		395.3
(-1) 		333.5
(-3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 402.4
(1.3)
P 		419.3
(2)
P 		330.9
(-1.4)
P 		345.1
(-0.9)
P 		290.6
(-3)
P 		445.2
(3)
P 		155
B 326.7
(-0.7)
P 		388.2
(1.9)
P 		396
(2.3)
P 		273.3
(-3)
P 		306.2
(-1.6)
P 		413.5
(3)
P 		140
C 367.7
(-0.7)
P 		397.8
(1)
P 		366.2
(-0.7)
P 		417.7
(2.1)
P 		325.5
(-3)
P 		434
(3)
P 		109
avr 365.6
(-0.2) 		401.8
(1.6) 		364.4
(-0.2) 		345.4
(-1.2) 		307.4
(-3) 		430.9
(3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 182.3
(3)
P 		91.1
(-1)
P 		89.4
(-1.1)
P 		44.8
(-3)
P 		138
B 144
(3)
P 		92.1
(-0.7)
P 		98.7
(-0.3)
P 		60.6
(-3)
P 		83
C 203.8
(3)
P 		122.7
(-0.6)
P 		145.7
(0.4)
P 		69.2
(-3)
P 		135
avr 176.7
(3) 		102
(-0.8) 		111.3
(-0.3) 		58.2
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 74.2
(-2.8)
P 		149.1
(3)
P 		72.1
(-3)
P 		87.5
(-1.8)
P 		87.7
(-1.8)
P 		108.4
(-0.2)
P 		77
B 113.7
(0)
P 		129.2
(1.2)
P 		96.2
(-1.3)
P 		72.4
(-3)
P 		124.4
(0.8)
P 		154.2
(3)
P 		82
C 136.3
(2.1)
P 		121.4
(0.7)
P 		93.2
(-2.1)
P 		84
(-3)
P 		105.3
(-0.9)
P 		145.3
(3)
P 		61
avr 108.1
(-0.1) 		133.2
(2.7) 		87.2
(-2.4) 		81.3
(-3) 		105.8
(-0.3) 		136
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187398_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1409
Sequence Type Exemplar sequence
Representative Public ID F55F8.3 NCBI
Target Description F55F8.3 /REP_DB=WormBase Gene ID /WP=CE11192 /TR=SW:P91341 /GB=AAB37807.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059252(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059252 NCBI Caenorhabditis elegans F55F8.3 (F55F8.3) mRNA, complete cds. 10/11 None
SNAP00000024467 ENSEMBL cdna:SNAP chromosome:CEL140:I:5649966:5653579:-1 10/11 None
GENEFINDER00000024480 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5649966:5653857:-1 10/11 None
F55F8.3 ENSEMBL cdna:known chromosome:CEL140:I:5649768:5653642:-1 gene:F55F8.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5649965-5653579(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55F8.3
Entrez Gene 172224 Entrez gene
SwissProt P91341 EMBL-EBI
WormBase CE30542 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262584_AT transducin family protein / WD-40 repeat family protein at
ATGENOME1:13868_AT transducin family protein / WD-40 repeat family protein at
CANINE_2:CFAAFFX.16725.1.S1_S_AT similar to Periodic tryptophan protein 2 homolog cfa
DROSOPHILA_2:1623924_AT dm
DROSGENOME1:153712_AT dm
CHICKEN:GGA.9874.1.S1_AT similar to periodic tryptophan protein 2 homolog; WD-repeat protein p103 gga
CHICKEN:GGAAFFX.23422.1.S1_AT similar to periodic tryptophan protein 2 homolog; WD-repeat protein p103 gga
HG-U133_PLUS_2:209336_AT PWP2 periodic tryptophan protein homolog (yeast) hs
HG-U133A:209336_AT PWP2 periodic tryptophan protein homolog (yeast) hs
HG-FOCUS:209336_AT PWP2 periodic tryptophan protein homolog (yeast) hs
HG-U133A_2:209336_AT PWP2 periodic tryptophan protein homolog (yeast) hs
HUGENEFL:U56085_AT PWP2 periodic tryptophan protein homolog (yeast) hs
U133_X3P:G1737065_3P_AT PWP2 periodic tryptophan protein homolog (yeast) hs
U133_X3P:HS2.407000.1.A1_3P_AT PWP2 periodic tryptophan protein homolog (yeast) hs
HG-U133_PLUS_2:1565604_AT PWP2 periodic tryptophan protein homolog (yeast) hs
HG-U95AV2:37555_AT PWP2 periodic tryptophan protein homolog (yeast) hs
U133_X3P:HS2.407000.1.S1_3P_AT PWP2 periodic tryptophan protein homolog (yeast) hs
HG-U133_PLUS_2:1565603_AT PWP2 periodic tryptophan protein homolog (yeast) hs
MOUSE430_2:1424193_AT PWP2 (periodic tryptophan protein) homolog, yeast mm
MOE430A:1424193_AT PWP2 (periodic tryptophan protein) homolog, yeast mm
MOUSE430A_2:1424193_AT PWP2 (periodic tryptophan protein) homolog, yeast mm
MU19KSUBA:TC19999_AT PWP2 (periodic tryptophan protein) homolog, yeast, mRNA (cDNA clone IMAGE:3991539) mm
MU19KSUBA:TC19999_G_AT PWP2 (periodic tryptophan protein) homolog, yeast, mRNA (cDNA clone IMAGE:3991539) mm
YEAST_2:1771819_AT Conserved 90S pre-ribosomal component essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites; contains eight WD-repeats; PWP2 deletion leads to defects in cell cycle and bud morphogenesis Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37807 Hypothetical protein F55F8.3 [Caenorhabditis elegans] ref|NP_491653.2| F55F8.3 [Caenorhabditis elegans] sp|P91341|PWP2_CAEEL Periodic tryptophan protein 2 homolog 0.0
blast T29585 hypothetical protein F55F8.3 - Caenorhabditis elegans 0.0
blast CAE68943 Hypothetical protein CBG14923 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007190 EMBL-EBI Periodic tryptophan protein-associated domain 2.0E-26
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0012
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.4E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0053
Pfam IPR007190 EMBL-EBI Periodic tryptophan protein-associated domain 2.0E-26
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0012
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.4E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.3E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0053
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024480 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:187398_S_AT
caactgctattatggcttctcttcgactgaataatgcacaatatatcactgaatgtttgg
aatcaactagcatctcacagaactcccaaataaaaataaacggaaagctagaaaagcaat
tttcagttccacttgtcgccagctcactaccgttgatgtatgcagagcgtcttctaaaat
ggatggttgaaggaaatgttatgtcatcgacacgacatgttcatttttatatgatttggc
tccgagcgattctgcaacatcacggaatgcaattgaaaggacgtgctgacgtggcaactc
tgactggtatccaacaaattgtggctcatcatcaacaacatatcactaaattggcaaacc
agaacaagttcgcattaaattggctcgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTGCTATTATGGCTTCTCTTCG 397 187 2255 Antisense
GGCTTCTCTTCGACTGAATAATGCA 393 537 2268 Antisense
TTTGGAATCAACTAGCATCTCACAG 188 667 2310 Antisense
AGCAATTTTCAGTTCCACTTGTCGC 39 77 2369 Antisense
CCAGCTCACTACCGTTGATGTATGC 484 273 2393 Antisense
GATGTATGCAGAGCGTCTTCTAAAA 459 409 2409 Antisense
GTCATCGACACGACATGTTCATTTT 451 467 2457 Antisense
GATTTGGCTCCGAGCGATTCTGCAA 611 425 2487 Antisense
AAGGACGTGCTGACGTGGCAACTCT 198 161 2531 Antisense
GTGGCAACTCTGACTGGTATCCAAC 360 491 2545 Antisense
AAGTTCGCATTAAATTGGCTCGTGA 165 157 2620 Antisense
Sequence Source Affymetrix Proprietary Database