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[187395_s_at]

Description B0361.6 /REP_DB=WormBase Gene ID /WP=CE00835 /TR=SW:Q10950 /GB=AAK18867.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 94      6grp_total > 86      4grp_total > 11      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 500
1 2 3 4 range
A 570.7
(-2.2)
P 		637.2
(-1.4)
P 		507.6
(-3)
P 		998.3
(3)
P 		491
B 661.2
(-0.5)
P 		642.6
(-0.8)
P 		498.5
(-3)
P 		895.3
(3)
P 		397
C 574.5
(-3)
P 		602.3
(-2.6)
P 		601.8
(-2.6)
P 		984
(3)
P 		410
avr 602.1
(-2.1) 		627.4
(-1.7) 		536
(-3) 		959.2
(3) 		423

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 567
1 2 3 4 5 6 range
A 414.9
(-1.5)
P 		319.9
(-3)
P 		636.6
(2.1)
P 		455.1
(-0.8)
P 		694.2
(3)
P 		630.8
(2)
P 		374
B 420.2
(-3)
P 		499.5
(-1.9)
P 		556.2
(-1.2)
P 		550.2
(-1.3)
P 		622.6
(-0.3)
P 		866.6
(3)
P 		446
C 370.4
(-3)
P 		479.6
(-1.7)
P 		377.8
(-2.9)
P 		604.1
(-0.3)
P 		476.3
(-1.8)
P 		887
(3)
P 		517
avr 401.8
(-3) 		433
(-2.5) 		523.5
(-1.1) 		536.5
(-0.9) 		597.7
(-0) 		794.8
(3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 207.8
(3)
P 		138.3
(-2.6)
P 		132.7
(-3)
P 		146.1
(-1.9)
P 		75
B 210.9
(3)
P 		158.7
(-0.3)
P 		115.5
(-3)
P 		190.8
(1.7)
P 		95
C 190.2
(0.3)
P 		173.2
(-2)
P 		209.7
(3)
P 		165.9
(-3)
P 		44
avr 203
(3) 		156.7
(-2.5) 		152.6
(-3) 		167.6
(-1.2) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 76.5
(-3)
P 		113.8
(-1.3)
P 		138.6
(-0.2)
P 		115.4
(-1.2)
P 		209.5
(3)
P 		153.6
(0.5)
P 		133
B 146.2
(-2.6)
P 		166.3
(-2)
P 		135.1
(-3)
P 		145.7
(-2.7)
P 		253
(0.8)
P 		323.1
(3)
P 		188
C 137.3
(-1.8)
P 		146.3
(-1.5)
P 		96.2
(-3)
P 		121.5
(-2.2)
P 		154.1
(-1.3)
P 		296.9
(3)
P 		201
avr 120
(-3) 		142.1
(-2) 		123.3
(-2.9) 		127.5
(-2.7) 		205.5
(0.7) 		257.9
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187395_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8022
Sequence Type Exemplar sequence
Representative Public ID B0361.6 NCBI
Target Description B0361.6 /REP_DB=WormBase Gene ID /WP=CE00835 /TR=SW:Q10950 /GB=AAK18867.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066201(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066201 NCBI Caenorhabditis elegans B0361.6 (B0361.6) mRNA, complete cds. 11/11 None
SNAP00000011045 ENSEMBL cdna:SNAP chromosome:CEL140:III:7275623:7277193:-1 11/11 None
GENEFINDER00000011058 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7275623:7277193:-1 11/11 None
B0361.6 ENSEMBL cdna:known chromosome:CEL140:III:7275427:7277196:-1 gene:B0361.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7275620-7277191(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0361.6
Entrez Gene 176028 Entrez gene
SwissProt Q10950 EMBL-EBI
WormBase CE00835 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246094_AT expressed protein at
CANINE_2:CFAAFFX.30663.1.S1_AT similar to CG12128-PA, isoform A cfa
DROSOPHILA_2:1633380_AT dm
DROSGENOME1:153156_AT dm
CHICKEN:GGA.16216.1.S1_AT similar to C9orf114 protein gga
HU35KSUBB:RC_R53241_AT chromosome 9 open reading frame 114 hs
U133_X3P:HS.224137.0.S3_3P_AT chromosome 9 open reading frame 114 hs
U133_X3P:HS.224137.0.S2_3P_AT chromosome 9 open reading frame 114 hs
HG-U133A_2:218565_AT chromosome 9 open reading frame 114 hs
HG-U133_PLUS_2:218565_AT chromosome 9 open reading frame 114 hs
HG-U133A:218565_AT chromosome 9 open reading frame 114 hs
HG-U133_PLUS_2:222674_AT chromosome 9 open reading frame 114 hs
HG-U133B:222674_AT chromosome 9 open reading frame 114 hs
HG-U95AV2:33287_AT chromosome 9 open reading frame 114 hs
MG-U74AV2:100054_S_AT DNA segment, Chr 2, Wayne State University 81, expressed mm
MG-U74AV2:162033_F_AT DNA segment, Chr 2, Wayne State University 81, expressed mm
MOE430A:1434119_AT DNA segment, Chr 2, Wayne State University 81, expressed mm
MOUSE430A_2:1434119_AT DNA segment, Chr 2, Wayne State University 81, expressed mm
MOUSE430_2:1434119_AT DNA segment, Chr 2, Wayne State University 81, expressed mm
MOE430B:1455004_AT DNA segment, Chr 2, Wayne State University 81, expressed mm
MOUSE430_2:1455004_AT DNA segment, Chr 2, Wayne State University 81, expressed mm
MU19KSUBC:TC40560_AT DNA segment, Chr 2, Wayne State University 81, expressed, mRNA (cDNA clone MGC:90552 IMAGE:5686308) mm
RG-U34B:RC_AA900713_AT similar to LOC495800 protein rn
RG-U34B:RC_AA900713_G_AT similar to LOC495800 protein rn
RG-U34C:RC_AI137443_AT similar to LOC495800 protein rn
RAE230A:1373782_A_AT similar to LOC495800 protein rn
RAT230_2:1373782_A_AT similar to LOC495800 protein rn
Protein Similarities
Method ID Description E-Value
blast AAK18867 Hypothetical protein B0361.6 [Caenorhabditis elegans] ref|NP_498602.1| B0361.6 [Caenorhabditis elegans] sp|Q10950|YMP6_CAEEL Hypothetical protein B0361.6 in chromosome III 0.0
blast CAE56440 Hypothetical protein CBG24142 [Caenorhabditis briggsae] 1.0E-168
blast BAE27727.1 unnamed protein product [Mus musculus] 3.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003750 EMBL-EBI Protein of unknown function DUF171 9.5E-10
Pfam IPR003750 EMBL-EBI Protein of unknown function DUF171 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:187395_S_AT
gccggtcttctgaatcctttagacgctcagcaccatcttaaatacgatgaaaagacactt
cgattccgcgaaggagttgtactgaaaaaacgatcaaaagatggccgtggaccaatctgt
aatattggattggaaaaggaatttgaaattgattcggacgccgttcaactgccaccgtac
acaagggttactgtagaaatcaagaatttgaccgaacaatgcaaactttaccgtggaagc
atcacaagtggagctacagtaacccgtgaaactggtttatattggggatattctgtgcga
cttatgactggattacagaaagttctccaagcaaaaaagtttgacattgtggccggagta
tctccacgtggaaagctggcttctcaaatggatgtttgcattttaaacaaaccaaaaata
ttgcttgtattcggtggagttgccggcgtggatgcagctgtggaatctgaagaattggca
gaatggcgtcgcgcagaagatgcattcgatgtgctcattagaacaacttctctttcaaat
gggtctcgcagcgaacgtgttgaggagaatgtgctttccgttttggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGGTCTTCTGAATCCTTTAGACG 261 283 523 Antisense
TTTAGACGCTCAGCACCATCTTAAA 116 675 540 Antisense
AAATTGATTCGGACGCCGTTCAACT 52 45 668 Antisense
TCAACTGCCACCGTACACAAGGGTT 413 631 687 Antisense
GTTTGACATTGTGGCCGGAGTATCT 550 451 861 Antisense
TCTCCACGTGGAAAGCTGGCTTCTC 649 609 883 Antisense
TATTCGGTGGAGTTGCCGGCGTGGA 44 663 950 Antisense
AATTGGCAGAATGGCGTCGCGCAGA 543 179 995 Antisense
AACTTCTCTTTCAAATGGGTCTCGC 146 139 1047 Antisense
GGTCTCGCAGCGAACGTGTTGAGGA 234 503 1064 Antisense
GAGAATGTGCTTTCCGTTTTGGCTC 552 391 1087 Antisense
Sequence Source Affymetrix Proprietary Database