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[187394_at]

Description C56G2.4 /REP_DB=WormBase Gene ID /WP=CE01873 /TR=SW:Q09288 /GB=AAA64331.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_high_8_8 > 42      6grp_highest_nonorm > 70      6grp_total > 06      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 400.3
(3)
P 		246.2
(-0.4)
P 		240.8
(-0.5)
P 		129.2
(-3)
A 		271
B 431.8
(3)
P 		276.7
(0)
P 		249.3
(-0.5)
P 		120.9
(-3)
P 		311
C 350.7
(1.4)
P 		410.7
(3)
P 		245.4
(-1.3)
P 		181
(-3)
P 		230
avr 394.3
(3) 		311.2
(1) 		245.2
(-0.6) 		143.7
(-3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 505
(3)
P 		397.9
(1)
P 		287
(-1.1)
P 		210.7
(-2.6)
P 		189.1
(-3)
P 		187.6
(-3)
P 		317
B 529.9
(3)
P 		396.9
(0.7)
P 		302.6
(-0.9)
P 		246.8
(-1.9)
P 		193.2
(-2.8)
P 		181.8
(-3)
P 		348
C 512.3
(3)
P 		368.7
(0.3)
P 		303.2
(-1)
P 		301.8
(-1)
P 		195.6
(-3)
P 		195.1
(-3)
P 		317
avr 515.7
(3) 		387.8
(0.7) 		297.6
(-1) 		253.1
(-1.8) 		192.6
(-2.9) 		188.2
(-3) 		328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 145.7
(3)
P 		53.4
(-1.4)
P 		62.9
(-0.9)
P 		18.9
(-3)
A 		127
B 137.7
(3)
P 		68.3
(-0.7)
P 		57.8
(-1.3)
P 		25.8
(-3)
P 		112
C 116.1
(2.9)
P 		118.1
(3)
P 		85.5
(0.8)
P 		30.5
(-3)
P 		88
avr 133.2
(3) 		79.9
(0) 		68.7
(-0.6) 		25.1
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 93.1
(-0)
P 		141.5
(3)
P 		62.5
(-1.9)
P 		53.4
(-2.5)
P 		57.1
(-2.3)
P 		45.7
(-3)
P 		96
B 184.4
(3)
P 		132.1
(0.4)
P 		73.5
(-2.6)
P 		65.4
(-3)
P 		78.5
(-2.3)
P 		67.8
(-2.9)
P 		119
C 189.9
(3)
P 		112.5
(-0.6)
P 		77.2
(-2.2)
P 		60.7
(-3)
P 		63.3
(-2.9)
P 		65.3
(-2.8)
P 		129
avr 155.8
(3) 		128.7
(1.3) 		71.1
(-2.3) 		59.8
(-3) 		66.3
(-2.6) 		59.6
(-3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6548
Sequence Type Exemplar sequence
Representative Public ID C56G2.4 NCBI
Target Description C56G2.4 /REP_DB=WormBase Gene ID /WP=CE01873 /TR=SW:Q09288 /GB=AAA64331.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065984 NCBI Caenorhabditis elegans C56G2.4 (C56G2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000001597 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6330896:6336442:1 9/11 None
C56G2.4.1 ENSEMBL cdna:known chromosome:CEL140:III:6331665:6335769:1 gene:C56G2.4 11/11 None
C56G2.4.2 ENSEMBL cdna:known chromosome:CEL140:III:6331672:6335656:1 gene:C56G2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001581 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6330894-6335655(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56G2.4
Entrez Gene 175894 Entrez gene
SwissProt Q09288 EMBL-EBI
WormBase CE30638 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA64331 Hypothetical protein C56G2.4 [Caenorhabditis elegans] ref|NP_498385.2| C56G2.4 [Caenorhabditis elegans] sp|Q09288|YQK4_CAEEL Hypothetical protein C56G2.4 in chromosome III precursor 0.0
blast T15866 hypothetical protein C56G2.4 - Caenorhabditis elegans 0.0
blast CAE72517 Hypothetical protein CBG19696 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187394_AT
aagttttctcttgccataatcgatgctcatcacggtcacttgcattggctcgaagtagac
attccggcggctaacttgaatgcagccaatggaaatgggctcacgaaagccgactacgtg
ccgttgattccaaagaagccgtccacgtgtcattcgtatctgtttgtacttcttgctcag
ccagcatcaatgcaaacattggaatcatattgtgaaggaatgtgtgagacgaggaaaaag
ttcagattagaattgttcaagcaacaacatggtctgcgtctctcagctctctccacagtc
tcatcttgctatgatctaccatatgcttatcatatcctaatgaaggatgcaagtcagaat
cgaacaatggaacgtcgtggtagcaagcaccggtcttctctatattcagatatgtcttcg
gaagtatgtgctgcattccatgtgtctccacatcacaagtgtccaataagtcaatcatcc
ttcactgtttcaataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTTTCTCTTGCCATAATCGATG 407 157 1177 Antisense
TGCTCATCACGGTCACTTGCATTGG 374 581 1200 Antisense
GGCTCGAAGTAGACATTCCGGCGGC 708 537 1223 Antisense
GGCTCACGAAAGCCGACTACGTGCC 304 537 1274 Antisense
CGTCCACGTGTCATTCGTATCTGTT 309 245 1316 Antisense
TACTTCTTGCTCAGCCAGCATCAAT 471 645 1343 Antisense
AGCAACAACATGGTCTGCGTCTCTC 208 77 1436 Antisense
TCTCCACAGTCTCATCTTGCTATGA 658 609 1466 Antisense
AACGTCGTGGTAGCAAGCACCGGTC 558 143 1547 Antisense
AGTATGTGCTGCATTCCATGTGTCT 330 63 1599 Antisense
AATCATCCTTCACTGTTTCAATAAT 335 171 1649 Antisense
Sequence Source Affymetrix Proprietary Database