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[187393_at]

Description B0361.4 /REP_DB=WormBase Gene ID /WP=CE00751 /TR=SW:Q10948 /GB=AAK18865.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_high_8_8 > 02      6grp_highest_nonorm > 90      6grp_total > 28      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 255.3
(1.4)
P 		68.4
(-3)
P 		93.7
(-2.4)
P 		324
(3)
P 		256
B 249.1
(0.9)
P 		90.6
(-3)
M 		89.9
(-3)
P 		337.2
(3)
P 		247
C 219.3
(0.2)
P 		120.2
(-2.1)
P 		82.1
(-3)
P 		342.2
(3)
P 		260
avr 241.2
(0.7) 		93.1
(-2.9) 		88.6
(-3) 		334.5
(3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 190.7
(3)
P 		175.9
(2)
P 		142.5
(-0.4)
P 		113.9
(-2.4)
P 		151.8
(0.3)
P 		105
(-3)
P 		86
B 266.7
(3)
P 		159.3
(-1.5)
P 		122.9
(-3)
P 		127.6
(-2.8)
P 		172
(-1)
P 		179.5
(-0.6)
P 		144
C 212.3
(3)
P 		194.9
(2)
P 		107.3
(-3)
P 		119.9
(-2.3)
P 		137.3
(-1.3)
P 		196.1
(2.1)
P 		105
avr 223.2
(3) 		176.7
(0.3) 		124.2
(-2.8) 		120.5
(-3) 		153.7
(-1.1) 		160.2
(-0.7) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 93
(3)
P 		14.8
(-3)
P 		24.5
(-2.3)
P 		47.4
(-0.5)
P 		78
B 79.4
(3)
P 		22.4
(-2.8)
M 		20.8
(-3)
P 		71.9
(2.2)
P 		59
C 72.6
(3)
P 		34.6
(-2.2)
P 		28.6
(-3)
P 		57.7
(1)
P 		44
avr 81.7
(3) 		23.9
(-3) 		24.6
(-2.9) 		59
(0.6) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 35.2
(-1.4)
P 		62.6
(3)
P 		31
(-2.1)
P 		28.9
(-2.5)
P 		45.8
(0.3)
P 		25.6
(-3)
P 		37
B 92.8
(3)
P 		53
(-0.8)
P 		29.8
(-3)
P 		33.8
(-2.6)
P 		69.9
(0.8)
P 		66.9
(0.5)
P 		63
C 78.7
(3)
P 		59.5
(0.9)
P 		27.3
(-2.6)
P 		24.1
(-3)
P 		44.4
(-0.8)
P 		65.6
(1.6)
P 		55
avr 68.9
(3) 		58.4
(1.4) 		29.4
(-2.9) 		28.9
(-3) 		53.4
(0.7) 		52.7
(0.6) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7822
Sequence Type Exemplar sequence
Representative Public ID B0361.4 NCBI
Target Description B0361.4 /REP_DB=WormBase Gene ID /WP=CE00751 /TR=SW:Q10948 /GB=AAK18865.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066199 NCBI Caenorhabditis elegans B0361.4 (B0361.4) mRNA, complete cds. 11/11 None
B0361.4 ENSEMBL cdna:known chromosome:CEL140:III:7265114:7268386:1 gene:B0361.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011057 7/11 Cross Hyb Matching Probes None
SNAP00000011043 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7265111-7268384(+) 90.67 100.0
Public Domain and Genome References
Gene Title
Ensembl B0361.4
Entrez Gene 181940 Entrez gene
WormBase CE38768 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498600 B0361.4 [Caenorhabditis elegans] sp|Q10948|YMP4_CAEEL Hypothetical protein B0361.4 in chromosome III 1.0E-173
blast AAZ82851 Hypothetical protein B0361.4 [Caenorhabditis elegans] 1.0E-156
blast CAE56442 Hypothetical protein CBG24145 [Caenorhabditis briggsae] 3.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498600.1 2 303-325,346-368
B0361.4 2 303-325,346-368
Sequence
Target Sequence 
>C. ELEGANS:187393_AT
ttattttttggttctcacacacgcccgacaactcggtggaacatatgcatctttatgtcc
tttgggcttccgacctgatctcttcgcccctcttgctgatgcagcaattgcagaatgtgt
caaacttgatggagttcataaaagatgtgaaacattgtctgcatggagccaactattctc
tgctttgttcactggtgtacgagatggttattatcaaagagtacggcatcagagaagaac
ttcgttaccgcagaatactatcacgaaacagctttccgtcgacttttcgaaaacatccga
cacgagcttcgtccgataaatacctgaagccttcaataattgtttccaactatttttctc
ttcataagataatctcatcaatttttgctgtaaatagttttttcttcactgaaaaaagaa
aagcacatttccatttcaatttctcatcttcttcctttcatccagggtttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTTTTGGTTCTCACACACGCC 422 679 581 Antisense
CACGCCCGACAACTCGGTGGAACAT 572 197 600 Antisense
TGCATCTTTATGTCCTTTGGGCTTC 421 577 626 Antisense
GCATGGAGCCAACTATTCTCTGCTT 434 311 741 Antisense
CTCTGCTTTGTTCACTGGTGTACGA 681 231 758 Antisense
GAAGAACTTCGTTACCGCAGAATAC 169 341 814 Antisense
TCACGAAACAGCTTTCCGTCGACTT 343 627 841 Antisense
GAAAACATCCGACACGAGCTTCGTC 433 355 869 Antisense
CGTCCGATAAATACCTGAAGCCTTC 446 225 890 Antisense
AAGCACATTTCCATTTCAATTTCTC 418 151 1001 Antisense
TTCTTCCTTTCATCCAGGGTTTGTG 476 683 1029 Antisense
Sequence Source Affymetrix Proprietary Database