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[187390_at]

Description C02F5.5 /REP_DB=WormBase Gene ID /WP=CE00041 /TR=SW:P34282 /GB=AAA27920.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 37      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 41.4
(1)
A 		49.6
(3)
A 		24.8
(-3)
A 		45.4
(2)
A 		25
B 45.1
(0.8)
A 		41
(-0.1)
A 		55.2
(3)
A 		27.4
(-3)
A 		28
C 70.6
(3)
A 		66.9
(2.2)
A 		44.1
(-3)
A 		60.8
(0.8)
A 		27
avr 52.4
(2.9) 		52.5
(3) 		41.4
(-3) 		44.5
(-1.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 62.1
(-2.9)
A 		72
(-2.8)
M 		59
(-3)
P 		69.2
(-2.8)
P 		256.2
(0.2)
P 		428.9
(3)
P 		370
B 60.3
(-2.6)
A 		37.2
(-3)
A 		65.5
(-2.5)
A 		68.8
(-2.5)
P 		277.4
(1)
P 		397.7
(3)
P 		361
C 60.7
(-2.8)
A 		76.9
(-2.6)
A 		75.8
(-2.6)
A 		49.9
(-3)
A 		249
(-0.1)
P 		463.5
(3)
P 		414
avr 61
(-3) 		62
(-3) 		66.8
(-2.9) 		62.6
(-3) 		260.9
(0.3) 		430
(3) 		369
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.1
(3)
A 		10.8
(0)
A 		6.5
(-3)
A 		6.6
(-2.9)
A 		9
B 14.4
(3)
A 		10.1
(-0)
A 		12.8
(1.9)
A 		5.8
(-3)
A 		9
C 23.4
(3)
A 		19.2
(1.1)
A 		15.4
(-0.7)
A 		10.3
(-3)
A 		13
avr 17.6
(3) 		13.4
(0.5) 		11.6
(-0.6) 		7.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 11.4
(-3)
A 		25.6
(-2.1)
M 		12.9
(-2.9)
P 		17.6
(-2.6)
P 		77.3
(1.3)
P 		104.4
(3)
P 		93
B 21
(-2.6)
A 		12.4
(-3)
A 		15.9
(-2.8)
A 		18.2
(-2.7)
P 		112.7
(1.4)
P 		148.3
(3)
P 		136
C 22.5
(-2.5)
A 		23.5
(-2.4)
A 		19.3
(-2.6)
A 		10
(-3)
A 		80.6
(-0.1)
P 		155.2
(3)
P 		145
avr 18.3
(-2.9) 		20.5
(-2.7) 		16
(-3) 		15.3
(-3) 		90.2
(0.7) 		136
(3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6903
Sequence Type Exemplar sequence
Representative Public ID C02F5.5 NCBI
Target Description C02F5.5 /REP_DB=WormBase Gene ID /WP=CE00041 /TR=SW:P34282 /GB=AAA27920.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066401(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066401 NCBI Caenorhabditis elegans C02F5.5 (C02F5.5) mRNA, complete cds. 11/11 None
SNAP00000031504 ENSEMBL cdna:SNAP chromosome:CEL140:III:8236128:8236773:1 11/11 None
GENEFINDER00000031515 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8236128:8236773:1 11/11 None
C02F5.5 ENSEMBL cdna:known chromosome:CEL140:III:8236128:8236773:1 gene:C02F5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8236123-8236769(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02F5.5
Entrez Gene 182122 Entrez gene
SwissProt P34282 EMBL-EBI
WormBase CE00041 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27920 Hypothetical protein C02F5.5 [Caenorhabditis elegans] ref|NP_498802.1| C02F5.5 [Caenorhabditis elegans] sp|P34282|YKK5_CAEEL Hypothetical protein C02F5.5 in chromosome III 4.0E-86
blast CAE58507 Hypothetical protein CBG01657 [Caenorhabditis briggsae] 7.0E-47
blast AAC05107 Hypothetical protein F17E9.5 [Caenorhabditis elegans] ref|NP_501412.1| F17E9.5 [Caenorhabditis elegans] 9.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498802.1 3 15-37,44-63,98-120
C02F5.5 3 15-37,44-63,98-120
SNAP00000031504 3 15-37,44-63,98-120
GENEFINDER00000031515 3 15-37,44-63,98-120
Sequence
Target Sequence 
>C. ELEGANS:187390_AT
caaatcccaccttacgagtactacaagtacgtgtttggaaccagatgtgccgttcttgca
tgctcatcttttgagcttatgatggtgctcttaggttcacttggagatagtaatgttctt
gcaaaactcttctatctcgtgttccttggtgcttctgctgcagtttctggtttcaatctt
caacagaacatcgatggtcgtgatgaaattaaaaagatcaccggatccggagacaatgag
actcgtggaaaagcagctgctcttgtcgggattccagctcttgctgcagtttttgtgttc
ctgtgcgtatcaggtcatgcattcttctcgttgttcgtgttggttcatgttctcgcttca
atcggacaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATCCCACCTTACGAGTACTACA 600 191 28 Antisense
TGGAACCAGATGTGCCGTTCTTGCA 189 547 63 Antisense
CGTTCTTGCATGCTCATCTTTTGAG 278 247 78 Antisense
GATGGTGCTCTTAGGTTCACTTGGA 657 407 108 Antisense
CTTGCAAAACTCTTCTATCTCGTGT 674 217 145 Antisense
GCAGTTTCTGGTTTCAATCTTCAAC 220 311 187 Antisense
AGCTGCTCTTGTCGGGATTCCAGCT 466 79 282 Antisense
GATTCCAGCTCTTGCTGCAGTTTTT 30 435 297 Antisense
CATTCTTCTCGTTGTTCGTGTTGGT 95 217 347 Antisense
TGTTCGTGTTGGTTCATGTTCTCGC 330 563 359 Antisense
TGTTCTCGCTTCAATCGGACAACTC 220 563 375 Antisense
Sequence Source Affymetrix Proprietary Database