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[187388_at]

Description C04E7.2 /REP_DB=WormBase Gene ID /WP=CE03919 /TR=SW:Q11193 /GB=AAA82329.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_high_8_8 > 27      6grp_highest_nonorm > 81      6grp_total > 80      4grp_total > 37      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 300.2
(0.9)
P 		342.4
(2.2)
P 		174.5
(-3)
M 		367.7
(3)
P 		193
B 384.4
(3)
P 		319.2
(0)
P 		254
(-3)
P 		257.4
(-2.8)
P 		130
C 335
(3)
P 		327.5
(1.4)
P 		306.1
(-3)
P 		309.7
(-2.3)
P 		29
avr 339.9
(3) 		329.7
(2.4) 		244.9
(-3) 		311.6
(1.2) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 251.4
(-2.7)
P 		381.1
(0.5)
P 		298.6
(-1.6)
P 		481.1
(3)
P 		240.8
(-3)
P 		328.4
(-0.8)
P 		240
B 255
(-1.1)
P 		293.6
(1.3)
P 		232.4
(-2.5)
P 		300.5
(1.7)
P 		321.8
(3)
P 		224.4
(-3)
P 		97
C 298.9
(-0)
P 		279.5
(-0.6)
P 		200.2
(-3)
P 		400.8
(3)
P 		238.5
(-1.9)
P 		254.1
(-1.4)
P 		201
avr 268.4
(-2) 		318.1
(-0) 		243.7
(-3) 		394.1
(3) 		267
(-2.1) 		269
(-2) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 109.3
(3)
P 		74.3
(-0.3)
P 		45.6
(-3)
M 		53.8
(-2.2)
P 		64
B 122.6
(3)
P 		78.8
(-0.9)
P 		58.9
(-2.6)
P 		54.8
(-3)
P 		68
C 110.9
(3)
P 		94.2
(1.3)
P 		106.7
(2.6)
P 		52.2
(-3)
P 		59
avr 114.3
(3) 		82.4
(-0.2) 		70.4
(-1.3) 		53.6
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 46.3
(-3)
P 		135.5
(3)
P 		65
(-1.7)
P 		122
(2.1)
P 		72.7
(-1.2)
P 		80
(-0.7)
P 		89
B 88.7
(-0.4)
P 		97.7
(0.3)
P 		56.4
(-3)
P 		79.6
(-1.1)
P 		130.8
(3)
P 		83.7
(-0.8)
P 		74
C 110.8
(3)
P 		85.3
(0.4)
P 		50.9
(-3)
P 		80.6
(-0)
P 		77.2
(-0.4)
P 		85.1
(0.4)
P 		60
avr 81.9
(0) 		106.2
(3) 		57.4
(-3) 		94.1
(1.5) 		93.6
(1.5) 		82.9
(0.1) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18372
Sequence Type Exemplar sequence
Representative Public ID C04E7.2 NCBI
Target Description C04E7.2 /REP_DB=WormBase Gene ID /WP=CE03919 /TR=SW:Q11193 /GB=AAA82329.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075689(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075689 NCBI Caenorhabditis elegans C04E7.2 (C04E7.2) mRNA, complete cds. 10/11 None
SNAP00000030876 ENSEMBL cdna:SNAP chromosome:CEL140:X:353620:357721:1 10/11 None
GENEFINDER00000030879 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:353620:357721:1 10/11 None
C04E7.2 ENSEMBL cdna:known chromosome:CEL140:X:353620:357873:1 gene:C04E7.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:353619-357721(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E7.2
Entrez Gene 180391 Entrez gene
SwissProt Q11193 EMBL-EBI
WormBase CE28816 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82329 Hypothetical protein C04E7.2 [Caenorhabditis elegans] ref|NP_508090.1| C04E7.2 [Caenorhabditis elegans] sp|Q11193|YX22_CAEEL Hypothetical protein C04E7.2 in chromosome X 0.0
blast T15405 hypothetical protein C04E7.2 - Caenorhabditis elegans 0.0
blast CAE74948 Hypothetical protein CBG22839 [Caenorhabditis briggsae] 7.0E-55
blast CAE74948 Hypothetical protein CBG22839 [Caenorhabditis briggsae] 1.0E-52
Sequence
Target Sequence 
>C. ELEGANS:187388_AT
agataattctaccgcctgatgtcaagctgcttcctgatgaatcaaatttagatggttacc
ttcgtacgtattgcaatccgtgtgataaacacaaaacaagtgaccgagtgcagccttcgc
caaaaattgctaagaaaaagaacggacctcttttgcttgacgatactccggacgcaatgt
tcagaagcaggccgctgctcggagacaacattggcgcgcacaaagagtggacaaatttca
tgaatcatataccagattacaaacgaaaggatttgcttaagagcatggatacgctcaaat
tttgtgagattttccggcctacacctacaggagcgttgcagttgacggctgccgaagtga
ctggacagcaagaatgcatgctacggctaaaagtgagcggcgaggatgaacctgtgtaca
ttcacaatgcgttagtttttttttgtggaaatataaagtattggatcgatccacatttgt
accatctgggagcttgtcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATAATTCTACCGCCTGATGTCAA 56 67 1022 Antisense
GTCAAGCTGCTTCCTGATGAATCAA 48 465 1042 Antisense
GATGGTTACCTTCGTACGTATTGCA 346 401 1072 Antisense
AACAAGTGACCGAGTGCAGCCTTCG 333 135 1116 Antisense
GACGATACTCCGGACGCAATGTTCA 211 379 1180 Antisense
GGCCGCTGCTCGGAGACAACATTGG 697 541 1211 Antisense
TTTTGTGAGATTTTCCGGCCTACAC 572 677 1321 Antisense
GCCTACACCTACAGGAGCGTTGCAG 59 279 1338 Antisense
TGACGGCTGCCGAAGTGACTGGACA 484 567 1364 Antisense
GGATCGATCCACATTTGTACCATCT 327 513 1484 Antisense
TGTACCATCTGGGAGCTTGTCTTGA 524 559 1499 Antisense
Sequence Source Affymetrix Proprietary Database