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[187387_at]

Description ZK697.8 /REP_DB=WormBase Gene ID /WP=CE18458 /TR=SW:O44578 /GB=AAC48252.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 02      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 44.3
(-1.7)
A 		35.4
(-2.8)
A 		34
(-3)
A 		82.5
(3)
A 		49
B 19.5
(-3)
A 		24.8
(-1.9)
A 		26.4
(-1.5)
A 		48
(3)
A 		29
C 38.1
(-2.2)
A 		39.2
(-2)
A 		32.7
(-3)
A 		72.6
(3)
P 		40
avr 34
(-2.5) 		33.1
(-2.7) 		31
(-3) 		67.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 45.9
(3)
P 		19.3
(-1.4)
A 		36.5
(1.4)
A 		9.6
(-3)
A 		15.8
(-2)
A 		17.5
(-1.7)
A 		36
B 42
(3)
A 		39.8
(2.7)
A 		34
(1.8)
A 		4.7
(-2.8)
A 		37.9
(2.4)
A 		3.1
(-3)
A 		39
C 13.6
(-1.8)
A 		60.3
(3)
A 		18.3
(-1.3)
A 		32.4
(0.1)
A 		1.6
(-3)
A 		3.6
(-2.8)
A 		59
avr 33.8
(1.9) 		39.8
(3) 		29.6
(1.1) 		15.6
(-1.6) 		18.4
(-1.1) 		8.1
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 16.1
(3)
A 		7.7
(-3)
A 		8.9
(-2.1)
A 		12.1
(0.1)
A 		8
B 6.2
(-2.9)
A 		6.1
(-3)
A 		6.1
(-3)
A 		10.2
(3)
A 		4
C 12.6
(3)
A 		11.3
(-3)
A 		11.4
(-2.5)
A 		12.2
(1.2)
P 		1
avr 11.6
(3) 		8.4
(-3) 		8.8
(-2.3) 		11.5
(2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8.5
(3)
P 		6.9
(1.4)
A 		7.9
(2.4)
A 		2.4
(-3)
A 		4.8
(-0.6)
A 		4.3
(-1.1)
A 		6
B 14.6
(2.7)
A 		13.3
(2.1)
A 		8.3
(0)
A 		1.3
(-3)
A 		15.4
(3)
A 		1.2
(-3)
A 		14
C 5
(-1.5)
A 		18.4
(3)
A 		4.7
(-1.6)
A 		6.5
(-1)
A 		0.5
(-3)
A 		1.2
(-2.8)
A 		18
avr 9.4
(1) 		12.9
(3) 		7
(-0.3) 		3.4
(-2.3) 		6.9
(-0.4) 		2.2
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187387_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15565
Sequence Type Exemplar sequence
Representative Public ID ZK697.8 NCBI
Target Description ZK697.8 /REP_DB=WormBase Gene ID /WP=CE18458 /TR=SW:O44578 /GB=AAC48252.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071095 NCBI Caenorhabditis elegans ZK697.8 (ZK697.8) mRNA, complete cds. 11/11 None
SNAP00000036769 ENSEMBL cdna:SNAP chromosome:CEL140:V:1748261:1748982:-1 9/11 None
GENEFINDER00000036771 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1748261:1755518:-1 10/11 None
ZK697.8 ENSEMBL cdna:known chromosome:CEL140:V:1748261:1749290:-1 gene:ZK697.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1748260-1749290(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK697.8
Entrez Gene 191414 Entrez gene
SwissProt O44578 EMBL-EBI
WormBase CE18458 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5386 carrier activity inferred from electronic annotation QuickGO AmiGO
5496 steroid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAR12988 Hypothetical protein ZK697.14 [Caenorhabditis elegans] ref|NP_001024318.1| ZK697.14 [Caenorhabditis elegans] 1.0E-131
blast AAC48252 Hypothetical protein ZK697.8 [Caenorhabditis elegans] ref|NP_503496.1| ZK697.8 [Caenorhabditis elegans] sp|O44578|TTH2_CAEEL Hypothetical transthyretin-like protein ZK697.8 in chromosome V 3.0E-97
blast AAC48252 Hypothetical protein ZK697.8 [Caenorhabditis elegans] ref|NP_503496.1| ZK697.8 [Caenorhabditis elegans] sp|O44578|TTH2_CAEEL Hypothetical transthyretin-like protein ZK697.8 in chromosome V 4.0E-95
blast CAB02087 Hypothetical protein F20G2.2 [Caenorhabditis elegans] ref|NP_506407.1| F20G2.2 [Caenorhabditis elegans] 5.0E-84
blast AAC48252 Hypothetical protein ZK697.8 [Caenorhabditis elegans] ref|NP_503496.1| ZK697.8 [Caenorhabditis elegans] sp|O44578|TTH2_CAEEL Hypothetical transthyretin-like protein ZK697.8 in chromosome V 1.0E-67
blast CAB00872 Hypothetical protein R09H10.3 [Caenorhabditis elegans] ref|NP_501962.2| R09H10.3 [Caenorhabditis elegans] sp|Q21882|TTH1_CAEEL Hypothetical transthyretin-like protein R09H10.3 in chromosome IV 6.0E-59
blast CAE60750 Hypothetical protein CBG04436 [Caenorhabditis briggsae] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR000895 EMBL-EBI Transthyretin 5.7E-60
Pfam IPR000895 EMBL-EBI Transthyretin 5.7E-60
Pfam IPR000895 EMBL-EBI Transthyretin 5.7E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503496.1 1 23-45
ZK697.8 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:187387_AT
gatcttgtttttttcggagccagtactaggaaatcatatgcatttttttacaccaatgaa
aaatatgctgtgaagtacatcgtttcgtgcaatattgttttttttttcaatttaattttt
tttatcattgtcagaaatgatcaaattcttgctatttttagctattgcagcagcgtacaa
attagaagatttttagcaactgtcatatcaaatgcagaattggctgtaccaactgcttca
atttcggcccacgtcctagacatttctggtggctcaccagctggaggaattcaaatcctt
gctttcattctgctaaataatggatggactaatattggatcacaattcacccaagacaac
gggcgtgttgactgggtctcacctgacttcacgcttattcctggaacataccgattggtc
tacatcacagaaccatactacacagcaaaaaacgtagagagcttctatccctatgtggag
gttgtattcaacattcgcaacgctacacaacactatcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTGTTTTTTTCGGAGCCAGTA 273 419 16 Antisense
GCTGTGAAGTACATCGTTTCGTGCA 152 295 82 Antisense
TGTACCAACTGCTTCAATTTCGGCC 692 559 240 Antisense
AATCCTTGCTTTCATTCTGCTAAAT 488 167 309 Antisense
GGATCACAATTCACCCAAGACAACG 507 511 352 Antisense
ACAACGGGCGTGTTGACTGGGTCTC 262 113 371 Antisense
TGACTTCACGCTTATTCCTGGAACA 56 571 399 Antisense
ACATCACAGAACCATACTACACAGC 509 105 437 Antisense
TAGAGAGCTTCTATCCCTATGTGGA 429 653 470 Antisense
GTATTCAACATTCGCAACGCTACAC 502 453 499 Antisense
CGCAACGCTACACAACACTATCATG 679 253 511 Antisense
Sequence Source Affymetrix Proprietary Database