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[187386_at]

Description C03B1.1 /REP_DB=WormBase Gene ID /WP=CE03903 /TR=SW:Q11108 /GB=AAA81745.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.8
(-3)
A 		2.8
(-0.4)
A 		1.9
(-2.7)
A 		4.1
(3)
A 		2
B 2.1
(-3)
A 		2.7
(-1.6)
A 		4.7
(3)
A 		2.3
(-2.5)
A 		3
C 3.5
(3)
A 		1.7
(-2.1)
A 		1.4
(-3)
A 		2.8
(1)
A 		2
avr 2.5
(-2.1) 		2.4
(-3) 		2.7
(-0.4) 		3.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.3
(0.8)
A 		1.5
(-2.3)
A 		1.8
(-1.1)
A 		1.5
(-2.3)
A 		1.3
(-3)
A 		2.9
(3)
A 		2
B 1
(-3)
A 		3.6
(3)
A 		1
(-3)
A 		1.8
(-1.2)
A 		1.5
(-1.8)
A 		1
(-3)
A 		3
C 1.3
(-3)
A 		1.4
(-1.8)
A 		1.8
(3)
A 		1.6
(0.6)
A 		1.7
(1.8)
A 		1.5
(-0.6)
A 		1
avr 1.5
(-3) 		2.2
(3) 		1.5
(-3) 		1.6
(-2.1) 		1.5
(-3) 		1.8
(-0.4) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(3)
A 		0.6
(0)
A 		0.5
(-3)
A 		0.6
(0)
A 		0
B 0.7
(-1)
A 		0.7
(-1)
A 		1.1
(3)
A 		0.5
(-3)
A 		1
C 1.1
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1
avr 0.8
(3) 		0.6
(-1) 		0.7
(1) 		0.5
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.5
(-1)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.7
(3)
A 		0
B 0.4
(-1.8)
A 		1.2
(3)
A 		0.2
(-3)
A 		0.5
(-1.2)
A 		0.6
(-0.6)
A 		0.4
(-1.8)
A 		1
C 0.5
(1)
A 		0.4
(-1)
A 		0.5
(1)
A 		0.3
(-3)
A 		0.6
(3)
A 		0.5
(1)
A 		0
avr 0.4
(-3) 		0.7
(3) 		0.4
(-3) 		0.4
(-3) 		0.5
(-1) 		0.5
(-1) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187386_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16214
Sequence Type Exemplar sequence
Representative Public ID C03B1.1 NCBI
Target Description C03B1.1 /REP_DB=WormBase Gene ID /WP=CE03903 /TR=SW:Q11108 /GB=AAA81745.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076670 NCBI Caenorhabditis elegans C03B1.1 (C03B1.1) mRNA, complete cds. 11/11 None
SNAP00000009789 ENSEMBL cdna:SNAP chromosome:CEL140:X:6373604:6375547:1 11/11 None
GENEFINDER00000009799 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6373604:6375547:1 11/11 None
C03B1.1 ENSEMBL cdna:known chromosome:CEL140:X:6373604:6375547:1 gene:C03B1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6373603-6375547(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03B1.1
Entrez Gene 182144 Entrez gene
SwissProt Q11108 EMBL-EBI
WormBase CE03903 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81745 Hypothetical protein C03B1.1 [Caenorhabditis elegans] ref|NP_509071.1| C03B1.1 [Caenorhabditis elegans] sp|Q11108|YX01_CAEEL Hypothetical protein C03B1.1 in chromosome X 1.0E-176
blast AAA81745 Hypothetical protein C03B1.1 [Caenorhabditis elegans] ref|NP_509071.1| C03B1.1 [Caenorhabditis elegans] sp|Q11108|YX01_CAEEL Hypothetical protein C03B1.1 in chromosome X 1.0E-162
Sequence
Target Sequence 
>C. ELEGANS:187386_AT
gtggatctggatacttccgtgatggagcaaacttcttccgaaatgcggatccattgaatc
tttccaacgatagcaagattcccatccaaatggtttgcatgaatctgtggacctgcgaaa
aaatcgaaatctggtatcgagatttttactcgcatcgttacttggagcaagtcgatggca
aggaaaaatacgatgaagatcaatatacagtttttgaccagttgtttgacaatcttggca
gtgacgcgagcacattgatggagcaacaaatcgagctcatgagaaattactgtcaagcga
aggctgagcttacaaacatggtggagttccagagaggcgttcggttttggagaatggtgt
caccaattcatctgccacgtaactatcagctggcgttgattcttgccaagcgtaatggat
gggtgcatgaagatgtggagcgttggttcagagtcttgtacgacgagtcatgctgtgttg
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATCTGGATACTTCCGTGATGG 455 489 386 Antisense
GTGATGGAGCAAACTTCTTCCGAAA 349 483 404 Antisense
ACGATAGCAAGATTCCCATCCAAAT 152 93 452 Antisense
GAGATTTTTACTCGCATCGTTACTT 370 397 524 Antisense
GACAATCTTGGCAGTGACGCGAGCA 679 363 613 Antisense
GGAGTTCCAGAGAGGCGTTCGGTTT 414 505 708 Antisense
AATGGTGTCACCAATTCATCTGCCA 360 163 738 Antisense
TCATCTGCCACGTAACTATCAGCTG 270 621 753 Antisense
GCTGGCGTTGATTCTTGCCAAGCGT 692 293 774 Antisense
GGAGCGTTGGTTCAGAGTCTTGTAC 102 521 822 Antisense
GTACGACGAGTCATGCTGTGTTGGA 1 459 843 Antisense
Sequence Source Affymetrix Proprietary Database