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[187385_s_at]

Description ZK757.3A /REP_DB=WormBase Gene ID /WP=CE01117 /TR=SW:P34681 /GB=CAA82941.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 27      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 32.7
(1.9)
A 		9.5
(-3)
A 		25.6
(0.4)
A 		37.7
(3)
A 		28
B 11.7
(-3)
A 		64.8
(3)
A 		36
(-0.3)
A 		44.2
(0.7)
A 		53
C 45.9
(0.9)
A 		59.3
(3)
A 		21
(-3)
A 		59.6
(3)
A 		39
avr 30.1
(-2.2) 		44.5
(2.2) 		27.5
(-3) 		47.2
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 22.5
(-2.7)
A 		8.1
(-3)
A 		10
(-3)
A 		44.1
(-2.3)
A 		140.4
(-0.5)
P 		320.6
(3)
P 		313
B 24.3
(-2.6)
A 		21.6
(-2.6)
A 		8
(-3)
A 		63.1
(-1.5)
A 		137.3
(0.4)
P 		233.1
(3)
P 		225
C 5.8
(-2.9)
A 		4.8
(-3)
A 		4
(-3)
A 		16.2
(-2.7)
A 		187.7
(2.2)
P 		217
(3)
P 		213
avr 17.5
(-2.8) 		11.5
(-2.9) 		7.3
(-3) 		41.1
(-2.2) 		155.1
(0.6) 		256.9
(3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.9
(3)
A 		2.1
(-3)
A 		6.7
(-0.2)
A 		5.5
(-0.9)
A 		10
B 3.7
(-3)
A 		16
(3)
A 		8.4
(-0.7)
A 		9.4
(-0.2)
A 		12
C 15.2
(1.8)
A 		17.1
(3)
A 		7.3
(-3)
A 		10.1
(-1.3)
A 		10
avr 10.3
(1) 		11.7
(3) 		7.5
(-3) 		8.3
(-1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 4.1
(-2.8)
A 		2.9
(-2.9)
A 		2.2
(-3)
A 		11.2
(-2.3)
A 		42.4
(0.2)
P 		78
(3)
P 		76
B 8.5
(-2.5)
A 		7.2
(-2.6)
A 		2
(-3)
A 		16.7
(-2)
A 		55.8
(0.8)
P 		86.9
(3)
P 		85
C 2.2
(-2.9)
A 		1.5
(-3)
A 		1
(-3)
A 		3.2
(-2.8)
A 		60.7
(2)
P 		72.6
(3)
P 		72
avr 4.9
(-2.8) 		3.9
(-2.8) 		1.7
(-3) 		10.4
(-2.3) 		53
(1) 		79.2
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187385_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6427
Sequence Type Exemplar sequence
Representative Public ID ZK757.3A NCBI
Target Description ZK757.3A /REP_DB=WormBase Gene ID /WP=CE01117 /TR=SW:P34681 /GB=CAA82941.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066791(11), NM_066790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066791 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-76) (tag-76) mRNA, complete cds. 11/11 None
NM_066790 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-76) (tag-76) mRNA, complete cds. 11/11 None
ZK757.3b ENSEMBL cdna:known chromosome:CEL140:III:9887110:9891247:-1 gene:ZK757.3 11/11 None
ZK757.3a.2 ENSEMBL cdna:known chromosome:CEL140:III:9887193:9891250:-1 gene:ZK757.3 11/11 None
ZK757.3a.1 ENSEMBL cdna:known chromosome:CEL140:III:9887193:9891329:-1 gene:ZK757.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176400 3 2 NM_066790 187385_s_at (11)
NM_066791 187385_s_at (11)
NM_066792 172354_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11704340-11708145(+) 90.07 90.07
chrIII:9887188-9891219(-) 98.24 100.0
Public Domain and Genome References
Ensembl ZK757.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54247 Hypothetical protein ZK757.3b [Caenorhabditis elegans] emb|CAB54514.1| Hypothetical protein ZK757.3b [Caenorhabditis elegans] ref|NP_499192.1| Temporarily Assigned Gene name family member (tag-76) [Caenorhabditis elegans] 0.0
blast CAA82941 Hypothetical protein ZK757.3a [Caenorhabditis elegans] emb|CAA82389.1| Hypothetical protein ZK757.3a [Caenorhabditis elegans] ref|NP_499191.1| Temporarily Assigned Gene name family member (tag-76) [Caenorhabditis elegans] sp|P34681|YO43_CAEEL Hypothetical protein ZK757.3 in chromosome III 0.0
blast CAA92969 Hypothetical protein T22B3.2a [Caenorhabditis elegans] emb|CAA92618.1| Hypothetical protein T22B3.2a [Caenorhabditis elegans] ref|NP_502218.1| T22B3.2a [Caenorhabditis elegans] 0.0
blast CAA92970 Hypothetical protein T22B3.2b [Caenorhabditis elegans] emb|CAA92619.1| Hypothetical protein T22B3.2b [Caenorhabditis elegans] ref|NP_502217.1| T22B3.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.5E-54
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.5E-54
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187385_S_AT
aattcgtacagcttgccttgcaattgctgaagacttccgtccacccatcacctacatcgt
tgttcaaaagagacatcatgctcgcatcttctgcaagtaccagaacgatatggttggaaa
agcaaagaacgttccacctggtaccacagttgacactggaatcgtctctcccgaaggatt
tgatttctatctgtgctctcactacggagtacagggaacttctcgtcctgcaagatatca
tgttcttctggatgaatgcaagttcactgctgatgaaatccaaagcatcacctacggaat
gtgtcatacatatggtcgttgtactcgttcggtctccattccaactccagtttattatgc
tgatttggtcgctactcgtgcacgctgtcacgtcaagagaaagctcggtcttgccgacaa
caatgattgtgacaccaactcgcgctcttcaacgcttgcttcattgctcaatgtgagaac
tggaagtggaaaaggaaagaaatcgtatgctccaagtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGTACAGCTTGCCTTGCAATT 615 177 2514 Antisense
GAAAAGCAAAGAACGTTCCACCTGG 251 339 2630 Antisense
TCCACCTGGTACCACAGTTGACACT 434 585 2646 Antisense
GGATTTGATTTCTATCTGTGCTCTC 132 511 2689 Antisense
ATCTGTGCTCTCACTACGGAGTACA 68 33 2702 Antisense
GAACTTCTCGTCCTGCAAGATATCA 101 351 2729 Antisense
ATGAAATCCAAAGCATCACCTACGG 509 41 2786 Antisense
GCATCACCTACGGAATGTGTCATAC 6 309 2798 Antisense
TCTCCATTCCAACTCCAGTTTATTA 14 611 2846 Antisense
TATTATGCTGATTTGGTCGCTACTC 581 663 2866 Antisense
GAAAGAAATCGTATGCTCCAAGTGT 285 359 3008 Antisense
Sequence Source Affymetrix Proprietary Database