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[187383_s_at]

Description F37A4.9 /REP_DB=WormBase Gene ID /WP=CE00790 /TR=SW:P41886 /GB=AAA50637.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 0      6grp_total > 97      4grp_total > 18      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 231.8
(-3)
M 		240.5
(-2.3)
P 		304
(3)
P 		298.1
(2.5)
P 		72
B 310.5
(2.4)
P 		313.9
(3)
A 		281.6
(-3)
P 		301.6
(0.7)
P 		32
C 293.9
(3)
A 		292.6
(2.8)
A 		251.6
(-3)
P 		268.5
(-0.6)
P 		42
avr 278.7
(-3) 		282.3
(-1) 		279.1
(-2.8) 		289.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 691
1 2 3 4 5 6 range
A 216.6
(-3)
P 		270.8
(-2.5)
P 		325.5
(-2.1)
P 		367.6
(-1.7)
P 		718.6
(1.4)
P 		907.2
(3)
P 		691
B 221.7
(-3)
M 		221.1
(-3)
P 		368.3
(-1.4)
P 		364.9
(-1.4)
P 		707.7
(2.4)
P 		762.1
(3)
P 		541
C 246.9
(-3)
M 		246.8
(-3)
P 		332.5
(-2.2)
P 		409
(-1.4)
P 		647.7
(0.9)
P 		859
(3)
P 		612
avr 228.4
(-3) 		246.2
(-2.8) 		342.1
(-1.9) 		380.5
(-1.5) 		691.3
(1.5) 		842.8
(3) 		614
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 84.4
(3)
M 		52.2
(-1.7)
P 		79.5
(2.3)
P 		43.6
(-3)
P 		41
B 99
(3)
P 		77.5
(-0.7)
A 		65.2
(-2.8)
P 		64.3
(-3)
P 		35
C 97.3
(3)
A 		84.1
(1.5)
A 		87.7
(1.9)
P 		45.3
(-3)
P 		52
avr 93.6
(3) 		71.3
(-0.1) 		77.5
(0.7) 		51.1
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 39.9
(-3)
P 		96.3
(-1.1)
P 		70.9
(-2)
P 		93.2
(-1.2)
P 		216.8
(2.9)
P 		220.9
(3)
P 		181
B 77.1
(-2.9)
M 		73.6
(-3)
P 		89.4
(-2.6)
P 		96.7
(-2.4)
P 		287.5
(3)
P 		284.2
(2.9)
P 		214
C 91.5
(-2.5)
M 		75.3
(-3)
P 		84.6
(-2.7)
P 		82.2
(-2.8)
P 		209.6
(0.8)
P 		287.6
(3)
P 		212
avr 69.5
(-3) 		81.7
(-2.6) 		81.6
(-2.6) 		90.7
(-2.3) 		238
(2.2) 		264.2
(3) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187383_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7346
Sequence Type Exemplar sequence
Representative Public ID F37A4.9 NCBI
Target Description F37A4.9 /REP_DB=WormBase Gene ID /WP=CE00790 /TR=SW:P41886 /GB=AAA50637.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066072(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066072 NCBI Caenorhabditis elegans F37A4.9 (F37A4.9) mRNA, complete cds. 11/11 None
SNAP00000044172 ENSEMBL cdna:SNAP chromosome:CEL140:III:6720582:6725424:-1 11/11 None
GENEFINDER00000044179 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6720582:6722190:-1 11/11 None
F37A4.9 ENSEMBL cdna:known chromosome:CEL140:III:6720348:6722191:-1 gene:F37A4.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6720580-6722189(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-41
Ensembl F37A4.9
Entrez Gene 175946 Entrez gene
SwissProt P41886 EMBL-EBI
WormBase CE00790 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50637 Hypothetical protein F37A4.9 [Caenorhabditis elegans] ref|NP_498473.1| F37A4.9 [Caenorhabditis elegans] sp|P41886|YPT9_CAEEL Hypothetical protein F37A4.9 in chromosome III 0.0
blast CAE70116 Hypothetical protein CBG16568 [Caenorhabditis briggsae] 1.0E-136
blast NP_079563 speckle-type POZ protein [Mus musculus] dbj|BAB23458.1| unnamed protein product [Mus musculus] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 7.3E-17
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.9E-11
Pfam IPR002083 EMBL-EBI MATH 7.3E-17
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.9E-11
Sequence
Target Sequence 
>C. ELEGANS:187383_S_AT
gacgaatcgtctgcgcatgatgcattcacagagtttctatccaccggagaatttagcgac
ttcattatagtcgcttcgtgtggtcgtgaattcccaactcatatgtgcatcctggcagca
cgttctgaatacttcaaagttctcctgagaaatcattcaaccaaggagtttatgtccaag
cgtctccagtttgatgacatttctgctcgcactcttgacgtcttgcttcgccatatgtac
gcgtccgctgctggtcgagttgtgaagctcgaagaggatcaactaaccgaggaccttata
tctgcaatggatagactaatgataaattcattgcgtgatgaagtggctcggctcatcggt
tcaaaagtgactgtcgataatgtgctcactcgtattagtatggctgcagagctaagactt
gatgatacctatgacgtgcttctggatttcttctcgaatcataaacatgagtgcatgaag
ttaactgcatgggacgaacttgaatctgcaaaaccaccattggccatcaaaatacttcga
gatgctttctcaaatactgattcaccttcgaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAATCGTCTGCGCATGATGCAT 637 379 652 Antisense
TTCACAGAGTTTCTATCCACCGGAG 615 683 676 Antisense
ATAGTCGCTTCGTGTGGTCGTGAAT 474 21 718 Antisense
ATTCCCAACTCATATGTGCATCCTG 330 9 741 Antisense
CATCCTGGCAGCACGTTCTGAATAC 466 211 759 Antisense
GTCCAAGCGTCTCCAGTTTGATGAC 393 477 825 Antisense
AGTTTGATGACATTTCTGCTCGCAC 404 63 839 Antisense
GTCTTGCTTCGCCATATGTACGCGT 19 469 871 Antisense
ATTGCGTGATGAAGTGGCTCGGCTC 194 7 981 Antisense
TATGACGTGCTTCTGGATTTCTTCT 377 657 1081 Antisense
CAAATACTGATTCACCTTCGACCAC 336 193 1202 Antisense
Sequence Source Affymetrix Proprietary Database