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[187382_at]

Description F55C10.4 /REP_DB=WormBase Gene ID /WP=CE11184 /TR=SW:Q20806 /GB=CAA98488.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 4.3
(-2.8)
A 		27.5
(0.4)
A 		46.9
(3)
A 		2.5
(-3)
A 		44
B 3.5
(-3)
A 		15.5
(-0.4)
A 		3.4
(-3)
A 		31.3
(3)
A 		28
C 4.9
(-2.3)
A 		4.3
(-2.4)
A 		1.3
(-3)
A 		31.2
(3)
A 		30
avr 4.2
(-3) 		15.8
(1) 		17.2
(1.5) 		21.7
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 38.3
(3)
A 		14.5
(-1)
A 		2.6
(-3)
A 		27.7
(1.2)
A 		31.3
(1.8)
A 		3.7
(-2.8)
A 		36
B 12.7
(-1.2)
A 		6.1
(-3)
A 		28.2
(3)
A 		16.8
(-0.1)
A 		24.3
(1.9)
A 		12.5
(-1.3)
A 		22
C 22.2
(0.7)
A 		35.1
(3)
A 		1.4
(-3)
A 		35.1
(3)
M 		25
(1.2)
A 		16.9
(-0.2)
A 		34
avr 24.4
(2.1) 		18.6
(-0.1) 		10.7
(-3) 		26.5
(2.9) 		26.9
(3) 		11
(-2.9) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.6
(-2.4)
A 		6
(-0.2)
A 		12.3
(3)
A 		0.4
(-3)
A 		12
B 1.1
(-2.7)
A 		3.8
(0.1)
A 		0.8
(-3)
A 		6.7
(3)
A 		6
C 1.6
(-1.6)
A 		1.2
(-2.1)
A 		0.5
(-3)
A 		5.3
(3)
A 		5
avr 1.4
(-3) 		3.7
(1.5) 		4.5
(3) 		4.1
(2.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.1
(1.4)
A 		5.1
(0.1)
A 		0.6
(-3)
A 		7
(1.4)
A 		9.4
(3)
A 		0.9
(-2.8)
A 		9
B 4.4
(-1.2)
A 		2
(-3)
A 		6.8
(0.6)
A 		4.4
(-1.2)
A 		9.9
(3)
A 		4.7
(-0.9)
A 		8
C 8.2
(1.5)
A 		10.7
(3)
A 		0.4
(-3)
A 		7.1
(0.9)
M 		8.1
(1.5)
A 		5.7
(0.1)
A 		10
avr 6.6
(0.7) 		5.9
(0) 		2.6
(-3) 		6.2
(0.3) 		9.1
(3) 		3.8
(-1.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187382_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13102
Sequence Type Exemplar sequence
Representative Public ID F55C10.4 NCBI
Target Description F55C10.4 /REP_DB=WormBase Gene ID /WP=CE11184 /TR=SW:Q20806 /GB=CAA98488.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073486 NCBI Caenorhabditis elegans F55C10.4 (F55C10.4) mRNA, complete cds. 11/11 None
SNAP00000017930 ENSEMBL cdna:SNAP chromosome:CEL140:V:11390226:11391200:1 11/11 None
GENEFINDER00000017935 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11389327:11391200:1 11/11 None
F55C10.4 ENSEMBL cdna:known chromosome:CEL140:V:11389286:11391266:1 gene:F55C10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11389326-11391200(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C10.4
Entrez Gene 179573 Entrez gene
SwissProt Q20806 EMBL-EBI
WormBase CE11184 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98488 Hypothetical protein F55C10.4 [Caenorhabditis elegans] ref|NP_505887.1| F55C10.4 [Caenorhabditis elegans] sp|Q20806|YXWL_CAEEL Hypothetical protein F55C10.4 in chromosome V 0.0
blast CAE75235 Hypothetical protein CBG23186 [Caenorhabditis briggsae] 0.0
blast CAE62244 Hypothetical protein CBG06300 [Caenorhabditis briggsae] 0.0
blast CAE62244 Hypothetical protein CBG06300 [Caenorhabditis briggsae] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 4.1E-107
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505887.1 1 9-31
F55C10.4 1 9-31
GENEFINDER00000017935 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:187382_AT
aaatgctgaacgtctttcaaccaaagacacaggaaaatcatttgttcgacctgaaaggtt
taattcgacatggagtcattggtcaagagcagctcaaaagaagccgatttatttggatgg
ttatgagaaaccaatacttagagaattgaaaacgatatccaacaacggaatgtttcattt
aaaaaacatgtacttaactgaattcaatgatctaggaatcggtcaaattccactgaaccc
aactgataatgttactcaattgatagaaagagaacatttagcagaaattgatgccgatat
gaagagaatgctctcaatgccatctatctcgaaacttgctgatagtttacccaaagagga
attctacatgccaatcattttcaaatgctacaatgaatctttttatcaccttcgagatac
taatcaaatgcgtccggatattctttgtgttaatgcatacagttgtgatcttcctcaaca
agttggcaatcgatgtgttcattcagatgccacgtatcattcgggtcctccaatgtggcc
aatatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCTGAACGTCTTTCAACCAAA 448 119 966 Antisense
GAGTCATTGGTCAAGAGCAGCTCAA 159 401 1038 Antisense
ATCGGTCAAATTCCACTGAACCCAA 99 35 1183 Antisense
GAGAATGCTCTCAATGCCATCTATC 575 391 1269 Antisense
ATGCCATCTATCTCGAAACTTGCTG 361 41 1282 Antisense
ATGAATCTTTTTATCACCTTCGAGA 507 43 1358 Antisense
GAGATACTAATCAAATGCGTCCGGA 146 397 1379 Antisense
ATGCGTCCGGATATTCTTTGTGTTA 66 41 1393 Antisense
AATGCATACAGTTGTGATCTTCCTC 660 165 1417 Antisense
TGTGATCTTCCTCAACAAGTTGGCA 506 553 1429 Antisense
GGTCCTCCAATGTGGCCAATATCAT 47 503 1489 Antisense
Sequence Source Affymetrix Proprietary Database