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[187381_s_at]

Description T03F1.2 /REP_DB=WormBase Gene ID /WP=CE13098 /TR=SW:P91428 /GB=AAB42232.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 51      6grp_total > 61      4grp_total > 27      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 336.1
(-3)
M 		472.1
(0.9)
M 		391.8
(-1.4)
A 		547.7
(3)
P 		212
B 401.2
(0.6)
A 		381
(-0.2)
A 		304.2
(-3)
M 		466.2
(3)
P 		162
C 362.7
(-2)
A 		479.2
(1.9)
P 		334.7
(-3)
M 		510.4
(3)
P 		176
avr 366.7
(-2.2) 		444.1
(0.7) 		343.6
(-3) 		508.1
(3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 522.7
(2.2)
A 		332.8
(-3)
A 		409.2
(-0.9)
A 		550.5
(3)
P 		458.9
(0.5)
P 		405.7
(-1)
M 		218
B 434
(-1.2)
P 		440.6
(-1)
P 		590.1
(3)
P 		478.9
(-0)
P 		420
(-1.6)
P 		367.9
(-3)
P 		222
C 338.9
(-2.5)
P 		410.6
(-0.1)
M 		500.5
(3)
P 		501.3
(3)
P 		350.4
(-2.1)
A 		325.1
(-3)
P 		176
avr 431.9
(-0.3) 		394.7
(-1.8) 		499.9
(2.6) 		510.2
(3) 		409.8
(-1.2) 		366.2
(-3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 122.4
(3)
M 		102.5
(0.2)
M 		102.4
(0.2)
A 		80.2
(-3)
P 		42
B 127.9
(3)
A 		94.1
(-0.5)
A 		70.5
(-3)
M 		99.3
(0)
P 		57
C 120.1
(0.9)
A 		137.8
(3)
P 		116.6
(0.5)
M 		86.1
(-3)
P 		52
avr 123.5
(3) 		111.5
(0.9) 		96.5
(-1.6) 		88.5
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 96.4
(-2.1)
A 		118.4
(0.5)
A 		89.1
(-3)
A 		139.6
(3)
P 		138.5
(2.9)
P 		98.8
(-1.8)
M 		51
B 151
(0.3)
P 		146.6
(-0.3)
P 		143.3
(-0.7)
P 		126.8
(-3)
P 		170.6
(3)
P 		137.2
(-1.6)
P 		44
C 125.6
(2.6)
P 		125.3
(2.5)
M 		127.4
(3)
P 		100.8
(-3)
P 		113.4
(-0.2)
A 		108.8
(-1.2)
P 		27
avr 124.3
(-0.8) 		130.1
(0.5) 		119.9
(-1.8) 		122.4
(-1.3) 		140.8
(3) 		114.9
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187381_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.279
Sequence Type Exemplar sequence
Representative Public ID T03F1.2 NCBI
Target Description T03F1.2 /REP_DB=WormBase Gene ID /WP=CE13098 /TR=SW:P91428 /GB=AAB42232.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058845 NCBI Caenorhabditis elegans COenzyme Q (ubiquinone) biosynthesis family member (coq-4) (coq-4) mRNA, complete cds. 11/11 None
SNAP00000013119 ENSEMBL cdna:SNAP chromosome:CEL140:I:3869223:3870888:1 11/11 None
GENEFINDER00000013123 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3869223:3870888:1 11/11 None
T03F1.2 ENSEMBL cdna:known chromosome:CEL140:I:3869223:3870888:1 gene:T03F1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3869222-3870888(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol coq-4
Ensembl T03F1.2
Entrez Gene 171966 Entrez gene
SwissProt P91428 EMBL-EBI
WormBase CE13098 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15473_AT coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein at
ATH1-121501:264038_AT coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein at
CANINE:1589295_AT similar to coenzyme Q4 homolog cfa
CANINE_2:CFA.13605.1.A1_AT similar to coenzyme Q4 homolog cfa
CANINE_2:CFAAFFX.30715.1.S1_AT similar to coenzyme Q4 homolog cfa
DROSOPHILA_2:1640286_AT dm
DROSGENOME1:148949_AT dm
CHICKEN:GGAAFFX.3066.1.S1_AT similar to DNA segment, Chr 2, ERATO Doi 97, expressed gga
HG-U133_PLUS_2:218328_AT coenzyme Q4 homolog (yeast) hs
HG-U133A:218328_AT coenzyme Q4 homolog (yeast) hs
HG-U133A_2:218328_AT coenzyme Q4 homolog (yeast) hs
HU35KSUBA:RC_AA436471_AT coenzyme Q4 homolog (yeast) hs
HU35KSUBA:H39589_AT coenzyme Q4 homolog (yeast) hs
U133_X3P:G7705806_3P_AT coenzyme Q4 homolog (yeast) hs
U133_X3P:HS.20159.1.S1_3P_AT coenzyme Q4 homolog (yeast) hs
HG-U133_PLUS_2:228931_AT coenzyme Q4 homolog (yeast) hs
HG-U133B:228931_AT coenzyme Q4 homolog (yeast) hs
HG-U95B:49359_AT coenzyme Q4 homolog (yeast) hs
HG-U95C:62205_S_AT coenzyme Q4 homolog (yeast) hs
HG-U95C:62206_I_AT coenzyme Q4 homolog (yeast) hs
HG-U95D:72378_AT Coenzyme Q4 homolog (yeast) hs
MU11KSUBA:C77073_RC_AT coenzyme Q4 homolog (yeast) mm
MU11KSUBA:C77073_RC_G_AT coenzyme Q4 homolog (yeast) mm
MG-U74AV2:92261_AT coenzyme Q4 homolog (yeast) mm
MG-U74BV2:114948_AT coenzyme Q4 homolog (yeast) mm
MOE430A:1435231_AT coenzyme Q4 homolog (yeast) mm
MOUSE430A_2:1435231_AT coenzyme Q4 homolog (yeast) mm
MOUSE430_2:1435231_AT coenzyme Q4 homolog (yeast) mm
MU19KSUBA:TC15016_S_AT Coenzyme Q4 homolog (yeast), mRNA (cDNA clone IMAGE:1494983) mm
MU19KSUBC:TC38200_AT Coenzyme Q4 homolog (yeast), mRNA (cDNA clone IMAGE:1494983) mm
RG-U34A:RC_AA800046_AT coenzyme Q4 homolog (yeast) (predicted) rn
RAE230A:1389484_AT coenzyme Q4 homolog (yeast) (predicted) rn
RAT230_2:1389484_AT coenzyme Q4 homolog (yeast) (predicted) rn
YEAST_2:1776216_AT Protein with a role in ubiquinone (Coenzyme Q) biosynthesis, possibly functioning in stabilization of Coq7p; located on the matrix face of the mitochondrial inner membrane; component of a mitochondrial ubiquinone-synthesizing complex Sc
Protein Similarities
Method ID Description E-Value
blast NP_491246 COenzyme Q (ubiquinone) biosynthesis family member (coq-4) [Caenorhabditis elegans] gb|AAB42232.1| Coenzyme q (ubiquinone) biosynthesis protein 4 [Caenorhabditis elegans] sp|P91428|COQ4_CAEEL Ubiquinone biosynthesis protein coq-4 1.0E-150
blast CAE66639 Hypothetical protein CBG11976 [Caenorhabditis briggsae] 1.0E-59
blast CAE66638 Hypothetical protein CBG11975 [Caenorhabditis briggsae] 5.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR007715 EMBL-EBI Coenzyme Q biosynthesis Coq4 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187381_S_AT
gttggaaagcgacttcttctcgaaaaaccaagaatttcaaatggaacaattgatagaaag
tggctaagacagttaccggatggaacattaggaaaattgtattcaaactttctcgatcgt
ttgaacacatctccagatgctcggcccactgtcaagtatatcgataatttggagcatctt
tatgttatgcaaaggtatcgcgaaacacacgacttcacccacatcgcattggagcagaaa
acgaacatgctcggcgaggtaacagtcaaatatttcgaaggaattcaatatgggcttcca
atgtgtgtcactggtggaatatttggaggtgccaggcttttaacaaaaaatcgccaagaa
cttgtcgaccggaacctcccttgggttgtggagcaggccacgaatgcacgattcttcatg
gctttcgactgggaaaatcactttgaaaagcagctcagcgaggtgcagaaggagctaaat
ataacgccattatctgagcttctggacctcccggaaatggaaccggatgtccctgatatt
ctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGAAAGCGACTTCTTCTCGAAA 455 435 202 Antisense
TGAACACATCTCCAGATGCTCGGCC 383 573 323 Antisense
CTCGGCCCACTGTCAAGTATATCGA 39 233 341 Antisense
GTATCGCGAAACACACGACTTCACC 180 453 396 Antisense
CTTCACCCACATCGCATTGGAGCAG 33 223 414 Antisense
TATGGGCTTCCAATGTGTGTCACTG 556 655 490 Antisense
GAACCTCCCTTGGGTTGTGGAGCAG 345 345 573 Antisense
AGGCCACGAATGCACGATTCTTCAT 459 49 596 Antisense
GCCATTATCTGAGCTTCTGGACCTC 177 281 687 Antisense
TCTGGACCTCCCGGAAATGGAACCG 683 605 702 Antisense
GGAACCGGATGTCCCTGATATTCTC 219 531 720 Antisense
Sequence Source Affymetrix Proprietary Database