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[187380_at]

Description B0280.4 /REP_DB=WormBase Gene ID /WP=CE00732 /TR=SW:P41995 /GB=AAA19082.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 35      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 39.7
(-3)
A 		70.3
(3)
A 		51.1
(-0.8)
A 		55.8
(0.2)
A 		31
B 54.4
(-0.6)
A 		87.8
(3)
A 		32.3
(-3)
A 		58.7
(-0.1)
A 		56
C 53
(-2.6)
A 		54.6
(-2.3)
A 		50.9
(-3)
A 		81.8
(3)
A 		31
avr 49
(-2) 		70.9
(3) 		44.8
(-3) 		65.4
(1.7) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 24.8
(-1.2)
A 		47.2
(0.9)
A 		69.1
(3)
A 		47
(0.9)
A 		51.8
(1.3)
A 		6.4
(-3)
A 		63
B 25.7
(-3)
A 		36.6
(-1.2)
A 		63
(3)
A 		62.3
(2.9)
A 		42.8
(-0.2)
A 		35.2
(-1.5)
A 		37
C 16.5
(-3)
A 		86.9
(3)
A 		57
(0.5)
A 		82.5
(2.6)
A 		50.9
(-0.1)
A 		45
(-0.6)
A 		70
avr 22.3
(-3) 		56.9
(2) 		63
(2.9) 		63.9
(3) 		48.5
(0.8) 		28.9
(-2) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.5
(2.3)
A 		15.3
(3)
A 		13.4
(1.4)
A 		8.2
(-3)
A 		7
B 17.4
(1.2)
A 		21.7
(3)
A 		7.5
(-3)
A 		12.5
(-0.9)
A 		14
C 17.5
(2.7)
A 		15.7
(-0.1)
A 		17.7
(3)
A 		13.8
(-3)
A 		4
avr 16.5
(1.9) 		17.6
(3) 		12.9
(-1.6) 		11.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.6
(-1.8)
A 		16.8
(3)
A 		15.1
(2.3)
A 		11.9
(1.1)
A 		15.6
(2.5)
A 		1.6
(-3)
A 		15
B 9
(-3)
A 		12.2
(-0.7)
A 		15.3
(1.5)
A 		16.5
(2.4)
A 		17.4
(3)
A 		13.1
(-0.1)
A 		8
C 6.1
(-3)
A 		26.5
(3)
A 		14.5
(-0.5)
A 		16.6
(0.1)
A 		16.5
(0.1)
A 		15.1
(-0.4)
A 		20
avr 6.6
(-3) 		18.5
(3) 		15
(1.2) 		15
(1.2) 		16.5
(2) 		9.9
(-1.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6433
Sequence Type Exemplar sequence
Representative Public ID B0280.4 NCBI
Target Description B0280.4 /REP_DB=WormBase Gene ID /WP=CE00732 /TR=SW:P41995 /GB=AAA19082.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066151(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066151 NCBI Caenorhabditis elegans Drosophila ODD-skipped-like family member (odd-1) (odd-1) mRNA, complete cds. 11/11 None
SNAP00000041607 ENSEMBL cdna:SNAP chromosome:CEL140:III:7108246:7109234:1 11/11 None
GENEFINDER00000041631 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7108246:7109234:1 11/11 None
B0280.4 ENSEMBL cdna:known chromosome:CEL140:III:7108246:7109234:1 gene:B0280.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7108492-7109232(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol odd-1
Ensembl B0280.4
Entrez Gene 181893 Entrez gene
SwissProt P41995 EMBL-EBI
WormBase CE34633 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA19082 Drosophila odd-skipped-like protein 1 [Caenorhabditis elegans] ref|NP_498552.2| Drosophila ODD-skipped-like family member (odd-1) [Caenorhabditis elegans] sp|P41995|ODD1_CAEEL Zinc finger protein odd-1 1.0E-118
blast CAE70130 Hypothetical protein CBG16590 [Caenorhabditis briggsae] 2.0E-53
blast CAE68879 Hypothetical protein CBG14844 [Caenorhabditis briggsae] 3.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.6E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.3E-5
Sequence
Target Sequence 
>C. ELEGANS:187380_AT
gcagattcaatcacaactattcagtaatcttggaaccccatggttcctgaaccctgaaca
gcataataaaacaaacaatgcaattcgaaagcgtccaaagaaagagttcatttgcaaata
ctgtgcccgtcactttaccaaatcctacaatctcatgattcatgagagaactcatacaaa
tgaacgtccatttcactgtgaaacctgtggaaaatcattccgtcgacaagatcatttgcg
tgatcacaaatatattcatgcaaaggagaagccgcataaatgtgagatctgtggaaaagg
attctgtcagctgagaacattgaatgtgcatcgatcatgccatcatgtgcaggaacccat
ttctgaaacattcatgctcggagctatcaagtttgggaaggcagactcattattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGATTCAATCACAACTATTCAGT 283 313 39 Antisense
TATTCAGTAATCTTGGAACCCCATG 575 661 56 Antisense
ATGGTTCCTGAACCCTGAACAGCAT 267 51 78 Antisense
GCAAATACTGTGCCCGTCACTTTAC 585 317 152 Antisense
ATGAACGTCCATTTCACTGTGAAAC 514 43 218 Antisense
ACCTGTGGAAAATCATTCCGTCGAC 74 85 241 Antisense
TTCCGTCGACAAGATCATTTGCGTG 573 697 256 Antisense
GTGCATCGATCATGCCATCATGTGC 413 479 364 Antisense
GCCATCATGTGCAGGAACCCATTTC 448 281 377 Antisense
CATGCTCGGAGCTATCAAGTTTGGG 100 211 411 Antisense
GTTTGGGAAGGCAGACTCATTATTG 657 449 429 Antisense
Sequence Source Affymetrix Proprietary Database