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[187379_at]

Description C45G9.2 /REP_DB=WormBase Gene ID /WP=CE01854 /TR=SW:Q09504 /GB=AAA62547.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 91      6grp_total > 77      4grp_total > 07      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 151.4
(-2.2)
P 		160.6
(-0.3)
P 		176.4
(3)
P 		147.6
(-3)
P 		29
B 187.6
(3)
P 		162.5
(-3)
P 		174.7
(-0.1)
P 		175.9
(0.2)
P 		25
C 160.8
(-0.4)
P 		117.3
(-3)
P 		146.9
(-1.2)
P 		216.5
(3)
P 		99
avr 166.6
(0.6) 		146.8
(-3) 		166
(0.5) 		180
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 125.7
(-2.5)
P 		156.8
(-1.7)
P 		143.9
(-2)
P 		108
(-3)
P 		196.1
(-0.6)
P 		328.6
(3)
P 		221
B 142.3
(-2.9)
P 		139.2
(-3)
P 		149
(-2.7)
P 		157.4
(-2.4)
P 		202.9
(-1)
P 		325.7
(3)
P 		187
C 125.5
(-2.3)
P 		92.4
(-3)
P 		169.2
(-1.5)
P 		170.3
(-1.4)
P 		172.4
(-1.4)
P 		393.8
(3)
P 		301
avr 131.2
(-3) 		129.5
(-3) 		154
(-2.3) 		145.2
(-2.6) 		190.5
(-1.3) 		349.4
(3) 		220
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 55.1
(3)
P 		34.9
(-0.6)
P 		46.1
(1.4)
P 		21.6
(-3)
P 		34
B 59.8
(3)
P 		40.1
(-2.3)
P 		40.5
(-2.2)
P 		37.5
(-3)
P 		22
C 53.2
(3)
P 		33.7
(-3)
P 		51.2
(2.4)
P 		36.5
(-2.1)
P 		20
avr 56
(3) 		36.2
(-1.9) 		45.9
(0.5) 		31.9
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 23.2
(-3)
P 		55.8
(0.4)
P 		31.3
(-2.1)
P 		27.4
(-2.6)
P 		59.2
(0.8)
P 		80
(3)
P 		57
B 49.5
(-2.1)
P 		46.3
(-2.3)
P 		36.2
(-3)
P 		41.7
(-2.6)
P 		82.4
(0.2)
P 		121.5
(3)
P 		85
C 46.5
(-1.9)
P 		28.2
(-3)
P 		43.1
(-2.1)
P 		34.2
(-2.7)
P 		55.8
(-1.4)
P 		131.8
(3)
P 		104
avr 39.7
(-2.6) 		43.4
(-2.3) 		36.9
(-2.8) 		34.4
(-3) 		65.8
(-0.5) 		111.1
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7361
Sequence Type Exemplar sequence
Representative Public ID C45G9.2 NCBI
Target Description C45G9.2 /REP_DB=WormBase Gene ID /WP=CE01854 /TR=SW:Q09504 /GB=AAA62547.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065677 NCBI Caenorhabditis elegans C45G9.2 (C45G9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000017864 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5069046:5070268:1 11/11 None
C45G9.2 ENSEMBL cdna:known chromosome:CEL140:III:5069102:5070268:1 gene:C45G9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017859 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5069081-5070267(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45G9.2
Entrez Gene 183479 Entrez gene
SwissProt Q09504 EMBL-EBI
WormBase CE29722 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18032.1.S1_AT similar to dihydrouridine synthase 4-like cfa
CANINE_2:CFA.18032.1.S1_S_AT similar to dihydrouridine synthase 4-like cfa
CANINE_2:CFA.2748.1.A1_AT similar to dihydrouridine synthase 4-like cfa
CANINE_2:CFAAFFX.6813.1.S1_AT similar to dihydrouridine synthase 4-like cfa
DROSOPHILA_2:1635555_AT dm
DROSGENOME1:153552_AT dm
HG-U133A_2:205762_S_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
HG-U133_PLUS_2:205762_S_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
HG-U133A:205762_S_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
HU35KSUBB:RC_R38511_S_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
HU35KSUBB:RC_H48085_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
HU35KSUBD:RC_AA608957_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
U133_X3P:G5902025_3P_A_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
U133_X3P:HS.97627.0.S1_3P_A_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
HG-U133A_2:205761_S_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
HG-FOCUS:205761_S_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
HG-U133_PLUS_2:205761_S_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
HG-U133A:205761_S_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
HG-U95AV2:38346_AT dihydrouridine synthase 4-like (S. cerevisiae) hs
MOUSE430_2:1453252_AT dihydrouridine synthase 4-like (S. cerevisiae) mm
MOE430B:1453252_AT dihydrouridine synthase 4-like (S. cerevisiae) mm
MG-U74CV2:133297_AT dihydrouridine synthase 4-like (S. cerevisiae) mm
MG-U74CV2:166718_AT dihydrouridine synthase 4-like (S. cerevisiae) mm
MOE430B:1441006_AT dihydrouridine synthase 4-like (S. cerevisiae) mm
MOUSE430_2:1441006_AT dihydrouridine synthase 4-like (S. cerevisiae) mm
MOUSE430_2:1420209_AT Dihydrouridine synthase 4-like (S. cerevisiae) (Dus4l), mRNA mm
MOE430B:1420209_AT Dihydrouridine synthase 4-like (S. cerevisiae) (Dus4l), mRNA mm
MOUSE430_2:1449777_AT Dihydrouridine synthase 4-like (S. cerevisiae) (Dus4l), mRNA mm
MOE430B:1449777_AT Dihydrouridine synthase 4-like (S. cerevisiae) (Dus4l), mRNA mm
MG-U74CV2:168039_AT Dihydrouridine synthase 4-like (S. cerevisiae) (Dus4l), mRNA mm
MG-U74CV2:169280_AT Dihydrouridine synthase 4-like (S. cerevisiae) (Dus4l), mRNA mm
RAE230B:1379551_AT similar to protein similar to E.coli yhdg and R. capsulatus nifR3 (predicted) rn
RAT230_2:1379551_AT similar to protein similar to E.coli yhdg and R. capsulatus nifR3 (predicted) rn
RAE230B:1385332_AT Similar to protein similar to E.coli yhdg and R. capsulatus nifR3 (predicted) rn
RAT230_2:1385332_AT Similar to protein similar to E.coli yhdg and R. capsulatus nifR3 (predicted) rn
YEAST_2:1778381_AT Dihydrouridine synthase, member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus3p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8033 tRNA processing inferred from electronic annotation QuickGO AmiGO
9228 thiamin biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4789 thiamin-phosphate diphosphorylase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
50660 FAD binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498078 C45G9.2 [Caenorhabditis elegans] gb|AAA62547.2| Hypothetical protein C45G9.2 [Caenorhabditis elegans] sp|Q09504|YQI2_CAEEL Hypothetical protein C45G9.2 in chromosome III 1.0E-162
blast A88449 protein C45G9.2 [imported] - Caenorhabditis elegans 1.0E-159
blast A88449 protein C45G9.2 [imported] - Caenorhabditis elegans 1.0E-158
blast CAE75105 Hypothetical protein CBG23028 [Caenorhabditis briggsae] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR001269 EMBL-EBI Protein of unknown function UPF0034 1.0E-126
Pfam IPR001269 EMBL-EBI Protein of unknown function UPF0034 8.2E-126
Sequence
Target Sequence 
>C. ELEGANS:187379_AT
tgtccgaagcatgacgtacgctccaaaggattcggaagtgctctcttaagcaaaccggaa
ctgctcgcagacatggttcgacagaccagagctcggatcccagacccagattttagtgtc
tcgctgaaaattcgaataaatcatgacatcgagaagacagtcgatttgtgcagaaaggca
gaagcagctggcgtaacacatctaactgttcatggaagaacaccatctcagagagcggag
cctatcgatattcaagctttaagaatagtaaaggactctgtatcagttccaattattgca
aatggaggcatcacaacacgagaagaagctctgttcctagctgaacaaactggagttgat
ggaattatggcggctaatggacttttggataatccggcacttttcgcaggacatgagcac
acacccagcgattgtgtggagaactttatgcgtctatcgagagaatatggtttagattgg
cttttgtaccatcaacaccttcaatatatgctccggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCGAAGCATGACGTACGCTCCA 463 557 277 Antisense
AACTGCTCGCAGACATGGTTCGACA 78 143 335 Antisense
GTTCGACAGACCAGAGCTCGGATCC 488 441 352 Antisense
GACCCAGATTTTAGTGTCTCGCTGA 307 381 379 Antisense
AGCAGCTGGCGTAACACATCTAACT 628 77 459 Antisense
GAGCGGAGCCTATCGATATTCAAGC 54 387 509 Antisense
GAAGAAGCTCTGTTCCTAGCTGAAC 177 341 598 Antisense
TGGATAATCCGGCACTTTTCGCAGG 123 549 662 Antisense
TTCGCAGGACATGAGCACACACCCA 391 695 679 Antisense
GATTGGCTTTTGTACCATCAACACC 12 435 751 Antisense
AACACCTTCAATATATGCTCCGGCC 246 137 770 Antisense
Sequence Source Affymetrix Proprietary Database