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[187377_at]

Description F37A4.5 /REP_DB=WormBase Gene ID /WP=CE00707 /TR=SW:P41883 /GB=AAA50633.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 28      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 20.2
(-2.3)
A 		26.1
(-1.7)
A 		13.9
(-3)
A 		70.7
(3)
P 		57
B 56
(3)
A 		46.6
(1.4)
A 		20.7
(-3)
A 		39.4
(0.2)
P 		35
C 28.1
(-0.5)
A 		37.1
(3)
A 		27.4
(-0.8)
M 		21.8
(-3)
A 		15
avr 34.8
(0.6) 		36.6
(1.1) 		20.7
(-3) 		44
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 440
1 2 3 4 5 6 range
A 6.6
(-3)
A 		22.7
(-2.8)
A 		55.2
(-2.3)
P 		132.4
(-1.1)
P 		292
(1.4)
P 		400.2
(3)
P 		394
B 27.4
(-3)
A 		36.4
(-2.8)
A 		38.4
(-2.8)
A 		108.7
(-1.4)
P 		270.2
(1.7)
P 		336.6
(3)
P 		309
C 26.7
(-3)
A 		52.2
(-2.6)
A 		69.8
(-2.4)
P 		130.6
(-1.5)
P 		242.5
(0.1)
P 		446.4
(3)
P 		420
avr 20.2
(-3) 		37.1
(-2.7) 		54.5
(-2.5) 		123.9
(-1.3) 		268.2
(1) 		394.4
(3) 		374
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7.4
(0.4)
A 		5.7
(-1.1)
A 		3.6
(-3)
A 		10.4
(3)
P 		7
B 17.9
(3)
A 		11.5
(0.1)
A 		4.8
(-3)
A 		8.4
(-1.4)
P 		13
C 9.3
(1.8)
A 		10.7
(3)
A 		9.5
(2)
M 		3.7
(-3)
A 		7
avr 11.5
(3) 		9.3
(0.6) 		6
(-3) 		7.5
(-1.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 1.2
(-3)
A 		8.1
(-2.6)
A 		12
(-2.3)
P 		33.6
(-1)
P 		88.1
(2.4)
P 		97.4
(3)
P 		96
B 9.5
(-3)
A 		12.1
(-2.9)
A 		9.3
(-3)
A 		28.8
(-2)
P 		109.8
(2.2)
P 		125.5
(3)
P 		116
C 9.9
(-3)
A 		15.9
(-2.7)
A 		17.8
(-2.7)
P 		26.3
(-2.3)
P 		78.5
(-0)
P 		149.4
(3)
P 		140
avr 6.9
(-3) 		12
(-2.7) 		13
(-2.7) 		29.6
(-1.8) 		92.1
(1.4) 		124.1
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7040
Sequence Type Exemplar sequence
Representative Public ID F37A4.5 NCBI
Target Description F37A4.5 /REP_DB=WormBase Gene ID /WP=CE00707 /TR=SW:P41883 /GB=AAA50633.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066069(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066069 NCBI Caenorhabditis elegans F37A4.5 (F37A4.5) mRNA, complete cds. 11/11 None
SNAP00000044170 ENSEMBL cdna:SNAP chromosome:CEL140:III:6711877:6713041:1 11/11 None
GENEFINDER00000044181 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6711877:6713041:1 11/11 None
F37A4.5 ENSEMBL cdna:known chromosome:CEL140:III:6711877:6713041:1 gene:F37A4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6711875-6713040(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37A4.5
Entrez Gene 185404 Entrez gene
SwissProt P41883 EMBL-EBI
WormBase CE00707 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50633 Hypothetical protein F37A4.5 [Caenorhabditis elegans] ref|NP_498470.1| F37A4.5 [Caenorhabditis elegans] sp|P41883|YPT5_CAEEL Hypothetical protein F37A4.5 in chromosome III 1.0E-180
blast CAE70119 Hypothetical protein CBG16572 [Caenorhabditis briggsae] 1.0E-167
blast AAC26287 Proteasome regulatory particle, non-atpase-like protein 11 [Caenorhabditis elegans] ref|NP_494712.1| proteasome Regulatory Particle, Non-ATPase-like family member (rpn-11) [Caenorhabditis elegans] sp|O76577|PSDE_CAEEL 26S proteasome non-ATPase regulatory subunit 14 (26S proteasome regulatory subunit rpn11) 3.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR000555 EMBL-EBI Peptidase M67, Mov34 1.8E-51
Sequence
Target Sequence 
>C. ELEGANS:187377_AT
aggattcggatgctggctatcttctgtggacgtaaacactcaacagtctttcgaagctct
ccatccccgtgctgttgcagttgtcgttgatccgattcagagtgtgaaggggaaagttat
gctggacgcattccgatctgtaaacccactcaacttgcaaattcgtcctctcgctccaac
tgctgaaccacgacagactacttccaatcttggacatctcactaagccatcgctaatctc
tgttgttcatggtcttggcaccaagtactattcgttgaatgtcgcctatcgcatggggtc
gaatgagcagaagatgttgatgtgtttgaataagaagagttggtatgatcaattgaatat
gtcaacttactcggagcttgagaagaagcaggaggagaagttcaagagcatcaacaaact
gattgcagtcttcaataaggatattgacgaagttaaggagaaaccaattgcagataagaa
aggaaagactcaagaagaagtcaaaaagtttggaaaaatcaatgcaaaacagcaattgca
aatgatcacttctagccttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATTCGGATGCTGGCTATCTTCT 543 57 354 Antisense
ACTCAACAGTCTTTCGAAGCTCTCC 168 101 391 Antisense
ATGCTGGACGCATTCCGATCTGTAA 264 43 472 Antisense
CACTCAACTTGCAAATTCGTCCTCT 678 195 500 Antisense
AACCACGACAGACTACTTCCAATCT 360 147 539 Antisense
CTTGGACATCTCACTAAGCCATCGC 271 217 562 Antisense
TAAGCCATCGCTAATCTCTGTTGTT 637 637 576 Antisense
CTCTGTTGTTCATGGTCTTGGCACC 366 231 591 Antisense
CTATTCGTTGAATGTCGCCTATCGC 678 223 621 Antisense
GAATATGTCAACTTACTCGGAGCTT 494 325 708 Antisense
GCAAATGATCACTTCTAGCCTTCTC 132 319 891 Antisense
Sequence Source Affymetrix Proprietary Database