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[187376_at]

Description ZK1128.2 /REP_DB=WormBase Gene ID /WP=CE01684 /TR=SW:Q09357 /GB=CAA87421.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      4grp_high_8_8 > 56      6grp_highest_nonorm > 90      6grp_total > 65      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 152.2
(2.7)
P 		140.2
(0.9)
P 		114
(-3)
A 		153.9
(3)
P 		40
B 149.5
(3)
P 		132.6
(0.3)
P 		130.3
(-0)
A 		111.5
(-3)
P 		38
C 153
(2.3)
P 		101.8
(-3)
A 		153.5
(2.3)
P 		159.9
(3)
P 		58
avr 151.6
(3) 		124.9
(-3) 		132.6
(-1.3) 		141.8
(0.8) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 140.1
(-0.7)
P 		122.2
(-1.7)
P 		204.1
(2.8)
P 		97.6
(-3)
P 		208.3
(3)
P 		147.5
(-0.3)
P 		111
B 147.1
(-3)
P 		158.9
(-2)
P 		170.7
(-1)
P 		218.8
(3)
P 		151.9
(-2.6)
P 		187.6
(0.4)
P 		72
C 159.8
(-1.7)
P 		201.6
(0.1)
P 		152
(-2)
P 		203.6
(0.2)
P 		129.8
(-3)
P 		270
(3)
P 		140
avr 149
(-3) 		160.9
(-1.6) 		175.6
(0) 		173.3
(-0.2) 		163.3
(-1.4) 		201.7
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 55.4
(3)
P 		30.4
(-1.6)
P 		29.8
(-1.7)
A 		22.5
(-3)
P 		33
B 47.7
(3)
P 		32.8
(-0.7)
P 		30.2
(-1.4)
A 		23.8
(-3)
P 		24
C 50.6
(2.3)
P 		29.3
(-2.5)
A 		53.5
(3)
P 		27
(-3)
P 		27
avr 51.2
(3) 		30.8
(-1.6) 		37.8
(-0) 		24.4
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 25.8
(-2.8)
P 		43.5
(-0.1)
P 		44.4
(0.1)
P 		24.8
(-3)
P 		62.9
(3)
P 		35.9
(-1.3)
P 		38
B 51.2
(-1)
P 		52.9
(-0.6)
P 		41.5
(-3)
P 		58
(0.5)
P 		61.7
(1.3)
P 		70
(3)
P 		29
C 59.2
(-0.6)
P 		61.5
(-0.4)
P 		38.7
(-3)
P 		41
(-2.7)
P 		42
(-2.6)
P 		90.4
(3)
P 		52
avr 45.4
(-2) 		52.6
(-0.2) 		41.5
(-3) 		41.3
(-3) 		55.5
(0.5) 		65.4
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187376_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6497
Sequence Type Exemplar sequence
Representative Public ID ZK1128.2 NCBI
Target Description ZK1128.2 /REP_DB=WormBase Gene ID /WP=CE01684 /TR=SW:Q09357 /GB=CAA87421.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181931(9), NM_066846(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181931 NCBI Caenorhabditis elegans ZK1128.2b (ZK1128.2) mRNA, complete cds. 9/11 None
NM_066846 NCBI Caenorhabditis elegans ZK1128.2a (ZK1128.2) mRNA, complete cds. 9/11 None
GENEFINDER00000023599 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10114931:10116592:1 9/11 None
ZK1128.2b ENSEMBL cdna:known chromosome:CEL140:III:10114930:10116630:1 gene:ZK1128.2 9/11 None
ZK1128.2a ENSEMBL cdna:known chromosome:CEL140:III:10114930:10116592:1 gene:ZK1128.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023586 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10114926-10116588(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1128.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54175 Hypothetical protein ZK1128.2b [Caenorhabditis elegans] ref|NP_871660.1| ZK1128.2b [Caenorhabditis elegans] 0.0
blast CAA87421 Hypothetical protein ZK1128.2a [Caenorhabditis elegans] ref|NP_499247.2| ZK1128.2a [Caenorhabditis elegans] sp|Q09357|YS02_CAEEL Hypothetical UPF0049 protein ZK1128.2 in chromosome III 0.0
blast CAE65038 Hypothetical protein CBG09879 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010286 EMBL-EBI Protein of unknown function DUF890 1.9E-30
Pfam IPR010286 EMBL-EBI Protein of unknown function DUF890 2.4E-8
Pfam IPR010286 EMBL-EBI Protein of unknown function DUF890 1.4E-20
Pfam IPR010286 EMBL-EBI Protein of unknown function DUF890 6.2E-55
Pfam IPR010286 EMBL-EBI Protein of unknown function DUF890 1.4E-20
Sequence
Target Sequence 
>C. ELEGANS:187376_AT
gaagcgctggatgttggcatggacattttcaaaatctgtatctcttacaacaattgttag
tgatttttttccttcaaaaaaattaatcgcgcttggtttacaggaccgtccaatttcatt
tcaatgtccaaagcctggattaacgaggttaatgcaggaaataagtatattaaatggacg
tttgaggcaagaagatacattagctattgttgctgagttcaaatgtgtgacatggacaaa
tcaaagagcccggaaaagagcaaaagctattctatcagagtctagcatcaaaaaagcaaa
gtggaacttctcaaacgtggcttgtcaagtagcttttggagctggagatggaaaagattc
atacacagacgctggaaactttgtgtcttctgaatcgataccaacgaacaatttaaatgc
gtgggataacgcttcgcaagcgtactttcctttgccgaatggtgaagttcctggcccgat
cattcgaatacgtatccaagttttttctgaagattcttatgattcgatttcatttgaatt
aatatccggttcaaaacaacaccttcatcaactagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCGCTGGATGTTGGCATGGACA 657 343 894 Antisense
ATCGCGCTTGGTTTACAGGACCGTC 679 35 979 Antisense
TACAGGACCGTCCAATTTCATTTCA 45 643 992 Antisense
GGAACTTCTCAAACGTGGCTTGTCA 556 529 1196 Antisense
ACGCTGGAAACTTTGTGTCTTCTGA 486 91 1262 Antisense
GTGTCTTCTGAATCGATACCAACGA 196 485 1276 Antisense
ACGCTTCGCAAGCGTACTTTCCTTT 614 81 1322 Antisense
GTACTTTCCTTTGCCGAATGGTGAA 284 447 1335 Antisense
GCCGAATGGTGAAGTTCCTGGCCCG 496 285 1347 Antisense
TTCCTGGCCCGATCATTCGAATACG 96 699 1361 Antisense
CAAAACAACACCTTCATCAACTAGT 685 189 1445 Antisense
Sequence Source Affymetrix Proprietary Database