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[187375_at]

Description T19C3.5 /REP_DB=WormBase Gene ID /WP=CE02056 /TR=SW:Q10011 /GB=AAC46596.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 05      6grp_total > 59      4grp_total > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 271.4
(-1.5)
P 		205.6
(-2.3)
A 		148.8
(-3)
A 		623.9
(3)
P 		475
B 191.1
(-2.4)
P 		169.8
(-2.7)
P 		139.9
(-3)
P 		666.4
(3)
P 		527
C 223.5
(-1.3)
P 		168.4
(-2.1)
A 		113.1
(-3)
A 		497
(3)
P 		384
avr 228.7
(-1.8) 		181.3
(-2.4) 		133.9
(-3) 		595.8
(3) 		462

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 232.8
(3)
M 		144.3
(-1.5)
A 		114.2
(-3)
A 		119.2
(-2.7)
M 		218
(2.3)
P 		227.7
(2.7)
P 		119
B 205
(3)
A 		142.6
(-0.2)
A 		87.3
(-3)
A 		167.5
(1.1)
P 		166.4
(1)
P 		197.3
(2.6)
P 		118
C 144
(-1.5)
A 		121.7
(-2.6)
P 		184
(0.6)
A 		114.1
(-3)
A 		126.8
(-2.4)
P 		232
(3)
P 		118
avr 193.9
(1.3) 		136.2
(-2.5) 		128.5
(-3) 		133.6
(-2.7) 		170.4
(-0.2) 		219
(3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 98.8
(3)
P 		44.6
(-2.4)
A 		38.9
(-3)
A 		91.3
(2.2)
P 		60
B 60.9
(-1.4)
P 		41.9
(-2.5)
P 		32.4
(-3)
P 		142
(3)
P 		110
C 74
(1.7)
P 		48.4
(-1.8)
A 		39.4
(-3)
A 		83.8
(3)
P 		44
avr 77.9
(0.6) 		45
(-2.3) 		36.9
(-3) 		105.7
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 42.9
(-0.4)
M 		51.3
(0.9)
A 		24.9
(-3)
A 		30.2
(-2.2)
M 		65.8
(3)
P 		55.4
(1.5)
P 		41
B 71.3
(2.7)
A 		47.5
(0)
A 		21.2
(-3)
A 		44.4
(-0.3)
P 		67.6
(2.3)
P 		73.6
(3)
P 		52
C 53.4
(0.3)
A 		37.1
(-1.4)
P 		46.8
(-0.4)
A 		22.9
(-3)
A 		41
(-1)
P 		77.7
(3)
P 		55
avr 55.9
(0.9) 		45.3
(-0.7) 		31
(-3) 		32.5
(-2.8) 		58.1
(1.3) 		68.9
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8129
Sequence Type Exemplar sequence
Representative Public ID T19C3.5 NCBI
Target Description T19C3.5 /REP_DB=WormBase Gene ID /WP=CE02056 /TR=SW:Q10011 /GB=AAC46596.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064821(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064821 NCBI Caenorhabditis elegans T19C3.5 (T19C3.5) mRNA, complete cds. 10/11 None
GENEFINDER00000033760 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:623834:627738:-1 11/11 None
T19C3.5 ENSEMBL cdna:known chromosome:CEL140:III:624629:627811:-1 gene:T19C3.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033750 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:624686-627738(-) 96.7 96.7
Public Domain and Genome References
Gene Title
Ensembl T19C3.5
Entrez Gene 188587 Entrez gene
SwissProt Q10011 EMBL-EBI
WormBase CE29347 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46596 Hypothetical protein T19C3.5 [Caenorhabditis elegans] ref|NP_497222.1| T19C3.5 [Caenorhabditis elegans] sp|Q10011|YSV5_CAEEL Hypothetical protein T19C3.5 in chromosome III precursor 0.0
blast CAE69226 Hypothetical protein CBG15266 [Caenorhabditis briggsae] 0.0
blast T16889 hypothetical protein T19C3.5 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 3.0E-7
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 6.1E-44
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 8.0E-16
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 1.0E-49
Sequence
Target Sequence 
>C. ELEGANS:187375_AT
gtcgttgagccatatctccgaacttcttgtggtttcttggggctttgtattggaaaattc
ttcaaaaagctgagaaacgagtacccgaacaatcacgtggatttgttctttcacacctac
agtacaccatatttcgtgatgagtgagaaggagggagtcatgttgaatatgagtctggcn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgaaaataaaaaa
attttgaaccaggcaaaaaataatattctggctcgtctcgttgttgacactttctctacc
gttgagcccttcctgaaccacaccagaatccacgggcgccttcaaaattccaccatcacg
gccagagtcgacttctcgaatattggtgatattcctaaagcattcctgagcgccttctcc
agtattctgtcaatgacggcccgtgaagcagtccgttcagttcttggtgtaggaattccg
attccatcctatgataatgtcactttggcagactcttcaacga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTTGAGCCATATCTCCGAACTT 700 471 832 Antisense
GAACTTCTTGTGGTTTCTTGGGGCT 299 351 851 Antisense
TTGTTCTTTCACACCTACAGTACAC 315 707 934 Antisense
TAATATTCTGGCTCGTCTCGTTGTT 53 635 1092 Antisense
GTCTCGTTGTTGACACTTTCTCTAC 572 469 1106 Antisense
ACGGCCAGAGTCGACTTCTCGAATA 578 95 1189 Antisense
ATTCCTAAAGCATTCCTGAGCGCCT 160 9 1222 Antisense
GCCTTCTCCAGTATTCTGTCAATGA 605 281 1243 Antisense
AATGACGGCCCGTGAAGCAGTCCGT 135 157 1263 Antisense
AGCAGTCCGTTCAGTTCTTGGTGTA 438 75 1278 Antisense
GTCACTTTGGCAGACTCTTCAACGA 248 465 1330 Antisense
Sequence Source Affymetrix Proprietary Database