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[187374_at]

Description B0244.6 /REP_DB=WormBase Gene ID /WP=CE01753 /TR=SW:Q09965 /GB=AAA68379.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 32.9
(-1.9)
A 		26.6
(-3)
A 		48.8
(0.9)
A 		60.4
(3)
A 		34
B 38.2
(0.6)
A 		57.4
(3)
A 		20.8
(-1.6)
A 		9.9
(-3)
A 		48
C 59.9
(3)
A 		30.8
(-1.8)
A 		23.2
(-3)
A 		59.2
(2.9)
A 		37
avr 43.7
(3) 		38.3
(0.5) 		30.9
(-3) 		43.2
(2.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 56
(1.2)
A 		13.3
(-3)
A 		21.6
(-2.2)
A 		74.4
(3)
A 		52.1
(0.8)
A 		42.7
(-0.1)
A 		61
B 53.9
(2.4)
A 		58.5
(3)
A 		30.1
(-0.5)
A 		36.4
(0.3)
A 		44.5
(1.3)
A 		9.5
(-3)
A 		49
C 31.6
(-0.9)
A 		51
(0.9)
A 		10.6
(-2.9)
A 		73.1
(3)
A 		9.9
(-3)
A 		10.6
(-2.9)
A 		63
avr 47.2
(0.9) 		40.9
(-0) 		20.8
(-3) 		61.3
(3) 		35.5
(-0.8) 		20.9
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12
(2.4)
A 		5.8
(-3)
A 		12.7
(3)
A 		8.8
(-0.4)
A 		7
B 12.2
(2)
A 		14.2
(3)
A 		4.8
(-1.7)
A 		2.1
(-3)
A 		12
C 19.8
(3)
A 		8.9
(-2.6)
A 		8.1
(-3)
A 		10
(-2)
A 		12
avr 14.7
(3) 		9.6
(-1) 		8.5
(-1.8) 		7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.3
(-0.6)
A 		4.7
(-3)
A 		4.7
(-3)
A 		18.9
(3)
A 		15.7
(1.6)
A 		10.4
(-0.6)
A 		14
B 18.8
(2.7)
A 		19.5
(3)
A 		7.3
(-1.6)
A 		9.6
(-0.7)
A 		18.1
(2.5)
A 		3.5
(-3)
A 		16
C 11.7
(1.2)
A 		15.6
(3)
A 		2.7
(-3)
A 		14.7
(2.6)
A 		3.2
(-2.8)
A 		3.6
(-2.6)
A 		13
avr 13.6
(2.5) 		13.3
(2.3) 		4.9
(-3) 		14.4
(3) 		12.3
(1.7) 		5.8
(-2.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7565
Sequence Type Exemplar sequence
Representative Public ID B0244.6 NCBI
Target Description B0244.6 /REP_DB=WormBase Gene ID /WP=CE01753 /TR=SW:Q09965 /GB=AAA68379.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065840 NCBI Caenorhabditis elegans B0244.6 (B0244.6) mRNA, complete cds. 11/11 None
GENEFINDER00000016002 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5743557:5751585:1 10/11 None
SNAP00000015993 ENSEMBL cdna:SNAP chromosome:CEL140:III:5743827:5744768:1 11/11 None
B0244.6 ENSEMBL cdna:known chromosome:CEL140:III:5737956:5744768:1 gene:B0244.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5737954-5744767(+) 99.42 100.0
Public Domain and Genome References
Gene Title
Ensembl B0244.6
Entrez Gene 181877 Entrez gene
SwissProt Q09965 EMBL-EBI
WormBase CE01753 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68379 Hypothetical protein B0244.6 [Caenorhabditis elegans] ref|NP_498241.1| B0244.6 [Caenorhabditis elegans] sp|Q09965|YS96_CAEEL Putative G-protein coupled receptor B0244.6 0.0
blast AAA68379 Hypothetical protein B0244.6 [Caenorhabditis elegans] ref|NP_498241.1| B0244.6 [Caenorhabditis elegans] sp|Q09965|YS96_CAEEL Putative G-protein coupled receptor B0244.6 1.0E-147
blast CAE64401 Hypothetical protein CBG09093 [Caenorhabditis briggsae] 1.0E-131
blast AAA68379 Hypothetical protein B0244.6 [Caenorhabditis elegans] ref|NP_498241.1| B0244.6 [Caenorhabditis elegans] sp|Q09965|YS96_CAEEL Putative G-protein coupled receptor B0244.6 1.0E-131
blast NP_498242 B0244.5 [Caenorhabditis elegans] sp|Q10909|YS95_CAEEL Hypothetical protein B0244.5 in chromosome III 1.0E-113
blast AAA68380 Hypothetical protein B0244.5 [Caenorhabditis elegans] 1.0E-112
blast CAE64330 Hypothetical protein CBG09010 [Caenorhabditis briggsae] 8.0E-94
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498241.1 17 51-73,94-116,131-153,166-188,208-242,263-285,314-336,399-421,431-453,479-501,521-540,647-669,684-706,719-736,740-757,770-792,807-838
B0244.6 17 51-73,94-116,131-153,166-188,208-242,263-285,314-336,399-421,431-453,479-501,521-540,647-669,684-706,719-736,740-757,770-792,807-838
GENEFINDER00000016002 15 20-42,62-84,97-119,134-165,187-209,288-310,330-352,372-391,404-426,449-471,500-522,553-570,591-613,776-798,827-849
SNAP00000015993 3 10-28,41-63,78-100
Sequence
Target Sequence 
>C. ELEGANS:187374_AT
ggcagttgtggtatcagttcctactgggttatttcaaaccgctggttatgtgcctggccc
tattaagtgtgactcccaagtttgcagtccaattgttggtttgataaattttataatcgt
cagctttgcatttcttatcacaataatcatcctgtcttttgtctttatttgcctgagctt
tcatattcgaaaagccaaaaaactcggaagttacacatcttcccaaactcttcaccatgc
tcgagggcggcttggatggactctcacagcaattatagtaatcagtttagctgaagggat
cccagagagtctactgattggacttaaagcagacaatgctctgaatacttgtaataactt
ttatcaagctgatcgtttggttgatgccactatttttacttcaatgaattctattgtttg
ggcgctagttctcatattggacccactcgcaagtacattattcgacgaaaaagtcttatc
agaaaccaaaaaacaactgaaaatgtgtaaaaagtactacgcaaaggttctagaaacttt
atggactcactcccacggaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAGTTGTGGTATCAGTTCCTACT 215 537 2340 Antisense
GCCTGGCCCTATTAAGTGTGACTCC 305 283 2391 Antisense
GTGTGACTCCCAAGTTTGCAGTCCA 105 487 2406 Antisense
AATCGTCAGCTTTGCATTTCTTATC 384 169 2454 Antisense
TCCTGTCTTTTGTCTTTATTTGCCT 23 595 2489 Antisense
GAAGTTACACATCTTCCCAAACTCT 500 335 2546 Antisense
GCTTGGATGGACTCTCACAGCAATT 146 307 2589 Antisense
TGGTTGATGCCACTATTTTTACTTC 546 549 2717 Antisense
ATTGTTTGGGCGCTAGTTCTCATAT 207 5 2752 Antisense
ATATTGGACCCACTCGCAAGTACAT 502 13 2773 Antisense
TTTATGGACTCACTCCCACGGAAAT 42 673 2877 Antisense
Sequence Source Affymetrix Proprietary Database