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[187373_s_at]

Description Y116F11B.10 /REP_DB=WormBase Gene ID /WP=CE25724 /TR=Q9NEJ8 /GB=CAB81979.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      6grp_total > 78      4grp_total > 13      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 110.2
(1.7)
P 		14.6
(-2.8)
A 		9.5
(-3)
A 		137.8
(3)
P 		128
B 113.9
(0)
P 		56
(-3)
A 		58.7
(-2.9)
A 		171.3
(3)
P 		115
C 97.4
(-0.7)
P 		81.1
(-1.6)
A 		56.7
(-3)
A 		163.1
(3)
P 		106
avr 107.2
(0.4) 		50.6
(-2.5) 		41.6
(-3) 		157.4
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 90.1
(-1.4)
P 		66.6
(-3)
P 		95.8
(-1)
P 		77.6
(-2.3)
P 		115.1
(0.3)
P 		155.5
(3)
P 		89
B 87.7
(-3)
P 		109.4
(-1.7)
P 		89
(-2.9)
A 		124.5
(-0.7)
P 		139.1
(0.2)
P 		185.3
(3)
P 		98
C 95.8
(-2)
P 		125.9
(-0.4)
P 		78.1
(-3)
P 		85.6
(-2.6)
P 		109.9
(-1.2)
P 		186.8
(3)
P 		109
avr 91.2
(-2.8) 		100.6
(-2.1) 		87.6
(-3) 		95.9
(-2.4) 		121.4
(-0.7) 		175.9
(3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 40.1
(3)
P 		3.2
(-2.9)
A 		2.5
(-3)
A 		20.2
(-0.2)
P 		38
B 36.3
(2.9)
P 		13.8
(-2.9)
A 		13.6
(-3)
A 		36.5
(3)
P 		23
C 32.3
(3)
P 		23.3
(-1.3)
A 		19.8
(-3)
A 		27.5
(0.7)
P 		13
avr 36.2
(3) 		13.4
(-2.7) 		12
(-3) 		28.1
(1) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 16.6
(-3)
P 		23.7
(-1)
P 		20.9
(-1.8)
P 		19.7
(-2.1)
P 		34.7
(2.1)
P 		37.8
(3)
P 		21
B 30.5
(-1.9)
P 		36.4
(-1.1)
P 		21.6
(-3)
A 		33
(-1.6)
P 		56.5
(1.4)
P 		69.1
(3)
P 		48
C 35.5
(-0.6)
P 		38.4
(-0.2)
P 		19.9
(-2.6)
P 		17.2
(-3)
P 		35.6
(-0.6)
P 		62.5
(3)
P 		45
avr 27.5
(-1.9) 		32.8
(-1) 		20.8
(-3) 		23.3
(-2.6) 		42.3
(0.6) 		56.5
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187373_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14567
Sequence Type Exemplar sequence
Representative Public ID Y116F11B.10 NCBI
Target Description Y116F11B.10 /REP_DB=WormBase Gene ID /WP=CE25724 /TR=Q9NEJ8 /GB=CAB81979.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058300 NCBI Caenorhabditis elegans Y48G1BM.5 (Y48G1BM.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000014677 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:231691:239214:-1 11/11 None
SNAP00000014669 ENSEMBL cdna:SNAP chromosome:CEL140:I:233275:237248:-1 11/11 None
SNAP00000031765 ENSEMBL cdna:SNAP chromosome:CEL140:V:19869286:19871922:1 11/11 None
GENEFINDER00000031782 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19868503:19871922:1 11/11 None
Y48G1BM.5 ENSEMBL cdna:known chromosome:CEL140:I:229090:234973:-1 gene:Y48G1BM.5 11/11 A 
Y116F11B.10b ENSEMBL cdna:known chromosome:CEL140:V:19868503:19871922:1 gene:Y116F11B.10 10/11 None
Y116F11B.10a ENSEMBL cdna:known chromosome:CEL140:V:19868503:19871922:1 gene:Y116F11B.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067869 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000022352 2/11 Cross Hyb Matching Probes None
SNAP00000022320 4/11 Cross Hyb Matching Probes None
Y54G2A.21 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19868502-19871922(+) 100.0 100.0
chrI:233277-236445(-) 94.68 94.68
chrIV:2902438-2912669(-) 90.87 90.87
Public Domain and Genome References
Gene Title
Ensembl Y48G1BM.5
Y116F11B.10
Entrez Gene 190038 Entrez gene
SwissProt Q965V1 EMBL-EBI
WormBase CE26117 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68497 Hypothetical protein Y48G1BM.5 [Caenorhabditis elegans] ref|NP_490701.1| Y48G1BM.5 [Caenorhabditis elegans] 0.0
blast AAF59577 Hypothetical protein Y54G2A.21 [Caenorhabditis elegans] ref|NP_500270.3| Y54G2A.21 [Caenorhabditis elegans] 0.0
blast AAK68498 Hypothetical protein Y48G1BM.6 [Caenorhabditis elegans] ref|NP_490702.1| Y48G1BM.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 8.8E-110
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 8.8E-110
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 2.4E-9
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 6.5E-104
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.3E-91
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 9.0E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490701.1 1 37-59
Y48G1BM.5 1 37-59
SNAP00000031765 1 325-347
Sequence
Target Sequence 
>C. ELEGANS:187373_S_AT
catgactatgaacacgtccattcccggtctttccatcgtaccaaaagatgcaacagttct
gccaatttcttcgcaaaatgatcttcgggacccaaaagtagttattcgggacgtcacggc
tgcccaaaaaagaaaaaatttagcgaaaaaaaaaatcaattttagctccaagaaaaggct
tccacaatcgacaaaatctcgaaatgctgtgcccgacttctcacaaaacgtacaaacttc
tattgcatttggaggcaattcaacgaaaattggattccgtggtctaccgagcaatgctct
ttctcgtccgaacccgatggcaatcacacaaacttgctcgacaagccagccaatcactag
aagccatccacttgttgctccaccagtatcttatcaacttccgaaatgcagtaatagttt
agctgaaaaaattcgagcaagttgtgggcaagcaagaaggagtgctgcagaatcttcttc
gactgaaagccacgtggacacaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGACTATGAACACGTCCATTCCC 59 211 1965 Antisense
CAAACTTGCTCGACAAGCCAGCCAA 617 191 2293 Antisense
TCGACAAGCCAGCCAATCACTAGAA 345 599 2302 Antisense
GCCAGCCAATCACTAGAAGCCATCC 657 279 2309 Antisense
ACTAGAAGCCATCCACTTGTTGCTC 153 101 2320 Antisense
TATCAACTTCCGAAATGCAGTAATA 392 659 2356 Antisense
GTGGGCAAGCAAGAAGGAGTGCTGC 217 487 2408 Antisense
GGAGTGCTGCAGAATCTTCTTCGAC 368 517 2423 Antisense
GAATCTTCTTCGACTGAAAGCCACG 397 327 2434 Antisense
CTTCGACTGAAAGCCACGTGGACAC 340 219 2441 Antisense
GACTGAAAGCCACGTGGACACAAAT 128 375 2445 Antisense
Sequence Source Affymetrix Proprietary Database