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[187372_at]

Description T16H12.1 /REP_DB=WormBase Gene ID /WP=CE00322 /TR=SW:P34564 /GB=CAA83137.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 28.1
(-3)
A 		38.2
(-2)
A 		47.2
(-1.1)
A 		87.8
(3)
A 		60
B 2.8
(-3)
A 		42.1
(0.4)
A 		5.6
(-2.8)
A 		72.7
(3)
A 		70
C 42.9
(-1.9)
A 		37.2
(-3)
A 		68.4
(3)
A 		63.6
(2.1)
A 		31
avr 24.6
(-3) 		39.2
(-1.3) 		40.4
(-1.1) 		74.7
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 8
(-3)
A 		7.7
(-3)
A 		23.6
(-1)
A 		8.4
(-2.9)
A 		39.9
(1.1)
A 		54.9
(3)
A 		47
B 29.9
(-0.6)
A 		68.4
(3)
A 		13.6
(-2.1)
A 		4.5
(-3)
A 		29.5
(-0.7)
A 		54.5
(1.7)
A 		64
C 36.9
(1.9)
A 		38.8
(2.2)
A 		8.8
(-2.9)
A 		43.7
(3)
A 		8.1
(-3)
A 		36.7
(1.8)
A 		36
avr 24.9
(-1.3) 		38.3
(1.1) 		15.3
(-3) 		18.9
(-2.4) 		25.8
(-1.1) 		48.7
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 10.2
(-0.5)
A 		8.3
(-3)
A 		12.3
(2.3)
A 		12.8
(3)
A 		5
B 0.9
(-3)
A 		10.4
(0.9)
A 		1.3
(-2.8)
A 		15.5
(3)
A 		15
C 14.2
(-1.4)
A 		10.7
(-3)
A 		23.8
(3)
A 		10.7
(-3)
A 		13
avr 8.4
(-3) 		9.8
(-1.2) 		12.5
(2.3) 		13
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.5
(-3)
A 		2.7
(-2.4)
A 		5.1
(-1.2)
A 		2.1
(-2.7)
A 		12.1
(2.3)
A 		13.4
(3)
A 		12
B 10.4
(-0.4)
A 		22.8
(3)
A 		3.3
(-2.4)
A 		1.2
(-3)
A 		12
(-0)
A 		20.3
(2.3)
A 		22
C 13.7
(3)
A 		11.8
(2)
A 		2.2
(-3)
A 		8.8
(0.4)
A 		2.6
(-2.8)
A 		12.3
(2.3)
A 		12
avr 8.5
(-0.5) 		12.4
(1.5) 		3.5
(-3) 		4
(-2.7) 		8.9
(-0.3) 		15.3
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7391
Sequence Type Exemplar sequence
Representative Public ID T16H12.1 NCBI
Target Description T16H12.1 /REP_DB=WormBase Gene ID /WP=CE00322 /TR=SW:P34564 /GB=CAA83137.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066836 NCBI Caenorhabditis elegans T16H12.1 (T16H12.1) mRNA, complete cds. 11/11 None
T16H12.1 ENSEMBL cdna:known chromosome:CEL140:III:10083529:10085952:1 gene:T16H12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013065 4/11 Cross Hyb Matching Probes None
GENEFINDER00000013081 4/11 Cross Hyb Matching Probes None
SNAP00000013067 5/11 Cross Hyb Matching Probes None
GENEFINDER00000013086 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10083524-10085948(+) 93.72 100.0
Public Domain and Genome References
Gene Title
Ensembl T16H12.1
Entrez Gene 188558 Entrez gene
SwissProt P34564 EMBL-EBI
WormBase CE00322 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83137 Hypothetical protein T16H12.1 [Caenorhabditis elegans] ref|NP_499237.1| T16H12.1 [Caenorhabditis elegans] sp|P34564|YNV1_CAEEL Hypothetical protein T16H12.1 in chromosome III 0.0
Sequence
Target Sequence 
>C. ELEGANS:187372_AT
tgtcccgggccaacatttttgaccggaaatctggtttcatccgggctttctacgtttaca
atggattcggaggtgtctctaacgattcattcggaatcccgggaacgatgccgtcaccaa
aatatcttgtctctccaatcagtaaccctacattttcgaacaagaaaacgcgccttattc
gacagtgtcatcaactccactcgagaaattattcaaattggggactcgggaaaccgaatg
ccaactgctatagagagcgaatacaatttcaacttcagcaacgatgatatcagcactgag
atccatcacaacgaagaaccaacatcgaagccagtgtcgtcggagacttgtaaattctgt
gggaacagacattctacagatgaatgtactgaatacacaacaggcgaatctcgtcgagca
cgtctacagaagcttctcctgtgcgtgttttgcttcaaacaggctcacccgtcgaaattc
gagtgtgctcgtcaacagatgaatgtcaagtgctgcagatgtttgcgattcgtacaccat
catgttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCCGGGCCAACATTTTTGACCG 104 453 460 Antisense
GGAGGTGTCTCTAACGATTCATTCG 177 517 528 Antisense
TCGGAATCCCGGGAACGATGCCGTC 505 599 550 Antisense
TATCTTGTCTCTCCAATCAGTAACC 296 659 582 Antisense
AAAACGCGCCTTATTCGACAGTGTC 208 131 624 Antisense
TCGACAGTGTCATCAACTCCACTCG 680 601 638 Antisense
TCAGCACTGAGATCCATCACAACGA 135 625 749 Antisense
GAAGCCAGTGTCGTCGGAGACTTGT 99 345 786 Antisense
AGGCGAATCTCGTCGAGCACGTCTA 367 53 861 Antisense
TCTCCTGTGCGTGTTTTGCTTCAAA 334 611 894 Antisense
GCGATTCGTACACCATCATGTTGCA 263 291 984 Antisense
Sequence Source Affymetrix Proprietary Database