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[187371_at]

Description T10F2.4 /REP_DB=WormBase Gene ID /WP=CE02043 /TR=SW:Q10051 /GB=AAK21467.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 27      6grp_highest_nonorm > 50      6grp_total > 26      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 543
1 2 3 4 range
A 743.6
(1.7)
P 		767
(2)
P 		839.6
(3)
P 		400.8
(-3)
A 		439
B 734.9
(1.5)
P 		843.8
(3)
P 		839.8
(2.9)
P 		406.6
(-3)
M 		437
C 854.8
(2.9)
P 		862.1
(3)
P 		776.6
(2.1)
P 		319.4
(-3)
M 		543
avr 777.8
(2.4) 		824.3
(3) 		818.7
(2.9) 		375.6
(-3) 		449

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 769.9
(3)
P 		680.7
(1.6)
P 		390.2
(-3)
P 		465.6
(-1.8)
P 		416.5
(-2.6)
P 		460.7
(-1.9)
P 		380
B 614.1
(3)
P 		546.4
(1.1)
P 		556
(1.4)
P 		434.5
(-1.9)
P 		396
(-3)
P 		531.8
(0.7)
P 		218
C 739.4
(3)
P 		586.3
(0.1)
P 		556.6
(-0.5)
P 		443.9
(-2.6)
P 		422
(-3)
P 		617
(0.7)
P 		317
avr 707.8
(3) 		604.5
(0.9) 		500.9
(-1.2) 		448
(-2.3) 		411.5
(-3) 		536.5
(-0.5) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 270.8
(3)
P 		166.5
(0)
P 		219.5
(1.5)
P 		58.7
(-3)
A 		212
B 234.3
(3)
P 		208.4
(1.9)
P 		194.6
(1.4)
P 		86.6
(-3)
M 		148
C 283
(3)
P 		247.9
(2.1)
P 		270.7
(2.7)
P 		53.9
(-3)
M 		229
avr 262.7
(3) 		207.6
(1.3) 		228.3
(1.9) 		66.4
(-3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 141.9
(-0.8)
P 		242.1
(3)
P 		85
(-3)
P 		118.1
(-1.7)
P 		125.7
(-1.4)
P 		112.2
(-2)
P 		157
B 213.7
(3)
P 		181.9
(1.1)
P 		135
(-1.8)
P 		115.1
(-3)
P 		160.9
(-0.2)
P 		198.3
(2.1)
P 		99
C 274.1
(3)
P 		178.9
(-0.1)
P 		141.7
(-1.3)
P 		89.3
(-3)
P 		136.5
(-1.5)
P 		206.5
(0.8)
P 		185
avr 209.9
(3) 		201
(2.5) 		120.6
(-2.2) 		107.5
(-3) 		141
(-1) 		172.3
(0.8) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187371_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6053
Sequence Type Exemplar sequence
Representative Public ID T10F2.4 NCBI
Target Description T10F2.4 /REP_DB=WormBase Gene ID /WP=CE02043 /TR=SW:Q10051 /GB=AAK21467.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065695(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065695 NCBI Caenorhabditis elegans T10F2.4 (T10F2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000029367 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5167207:5171999:-1 11/11 None
SNAP00000029354 ENSEMBL cdna:SNAP chromosome:CEL140:III:5170313:5171999:-1 11/11 None
T10F2.4.1 ENSEMBL cdna:known chromosome:CEL140:III:5169892:5172002:-1 gene:T10F2.4 11/11 None
T10F2.4.2 ENSEMBL cdna:known chromosome:CEL140:III:5169921:5172004:-1 gene:T10F2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5170311-5172049(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10F2.4
Entrez Gene 175705 Entrez gene
SwissProt Q10051 EMBL-EBI
WormBase CE38104 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16900_AT transducin family protein / WD-40 repeat family protein at
ATH1-121501:263666_AT transducin family protein / WD-40 repeat family protein at
CANINE_2:CFA.18356.1.S1_S_AT similar to PRP19/PSO4 homolog (Nuclear matrix protein 200) (hPso4) cfa
CANINE_2:CFA.18642.1.S1_S_AT similar to PRP19/PSO4 homolog (Nuclear matrix protein 200) (hPso4) cfa
CANINE_2:CFA.4200.1.S1_AT similar to PRP19/PSO4 homolog (Nuclear matrix protein 200) (hPso4) cfa
DROSOPHILA_2:1622980_AT GTP-binding-protein dm
DROSGENOME1:143730_AT GTP-binding-protein dm
CHICKEN:GGA.8361.1.S1_S_AT similar to PRP19/PSO4 homolog; nuclear matrix protein NMP200 related to splicing factor PRP19 gga
HG-U95AV2:33231_AT PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) hs
HG-U133_PLUS_2:203103_S_AT PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) hs
HG-U133A:203103_S_AT PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) hs
HG-FOCUS:203103_S_AT PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) hs
HG-U133A_2:203103_S_AT PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) hs
HU35KSUBC:RC_W79485_AT PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) hs
U133_X3P:G7657380_3P_A_AT PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) hs
HG-U95AV2:33230_AT PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) hs
MOE430A:1449635_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MOUSE430A_2:1449635_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MOUSE430_2:1449635_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MOE430A:1419839_X_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MOUSE430_2:1419839_X_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MOUSE430A_2:1419839_X_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MG-U74AV2:97395_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MOE430A:1460633_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MOUSE430A_2:1460633_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MOUSE430_2:1460633_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MU11KSUBA:AA231428_S_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MU11KSUBB:MSA.31208.0_S_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MG-U74AV2:162235_F_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MOE430B:1456531_X_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MOUSE430_2:1456531_X_AT PRP19/PSO4 homolog (S. cerevisiae) mm
MU19KSUBC:TC35092_AT PRP19/PSO4 homolog (S. cerevisiae) (Prp19), mRNA mm
MU19KSUBC:TC39527_AT PRP19/PSO4 homolog (S. cerevisiae) (Prp19), mRNA mm
MU19KSUBC:TC40841_AT PRP19/PSO4 homolog (S. cerevisiae) (Prp19), mRNA mm
RG-U34B:RC_AI071019_G_AT neuronal differentiation-related gene rn
RG-U34B:RC_AI071019_AT neuronal differentiation-related gene rn
RG-U34C:RC_AI102339_AT neuronal differentiation-related gene rn
RG-U34C:RC_AI137634_AT neuronal differentiation-related gene rn
RG-U34C:RC_AI111653_AT neuronal differentiation-related gene rn
RAE230A:1398867_AT neuronal differentiation-related gene rn
RAT230_2:1398867_AT neuronal differentiation-related gene rn
Protein Similarities
Method ID Description E-Value
blast NP_498096 T10F2.4 [Caenorhabditis elegans] gb|AAK21467.2| Hypothetical protein T10F2.4 [Caenorhabditis elegans] sp|Q10051|PRP19_CAEEL PRP19/PSO4 homolog 0.0
blast CAE73779 Hypothetical protein CBG21324 [Caenorhabditis briggsae] 0.0
blast T16845 hypothetical protein T10F2.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.037
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.6E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.4E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.1E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.0E-13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.0E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2E-6
Sequence
Target Sequence 
>C. ELEGANS:187371_AT
tcaggcacccgttacagatatctccctcaatgcatccggtgattacattctctccgcttc
tgatgattcttactgggcattctccgacattcgttccggaaaatcgctttgcaaggtttc
agttgaaccaggatcacaaattgccgttcattccatcgagttccatcctgatggtcttat
ttttggaactggagctgcggatgccgttgtgaagatttgggatttgaagaatcaaaccgt
ggctgctgcattcccgggacatactgctgccgttcgttcgattgcgttttctgaaaacgg
atattatttggctacgggatcagaggatggagaggtcaaattatgggatcttagaaaatt
gaagaatctgaaaactttcgctaacgaagagaaacaaccgatcaactccctgtccttcga
catgactggaacattcctaggaattggtggccaaaaagttcaagttttgcatgtgaagag
ctggagtgaagttgtatcactttctgatcattctggaccagtcactggagttagattcgg
agaaaatgctcgttcattggtgacgtgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGGCACCCGTTACAGATATCTCC 372 623 939 Antisense
TCCCTCAATGCATCCGGTGATTACA 311 597 961 Antisense
TCTCCGCTTCTGATGATTCTTACTG 305 611 989 Antisense
CATTCTCCGACATTCGTTCCGGAAA 165 217 1016 Antisense
CATTCCATCGAGTTCCATCCTGATG 355 217 1087 Antisense
GAACTGGAGCTGCGGATGCCGTTGT 616 347 1124 Antisense
GAATCAAACCGTGGCTGCTGCATTC 704 325 1167 Antisense
CCGTTCGTTCGATTGCGTTTTCTGA 340 263 1208 Antisense
TCCCTGTCCTTCGACATGACTGGAA 501 597 1345 Antisense
ATCACTTTCTGATCATTCTGGACCA 10 29 1434 Antisense
ATGCTCGTTCATTGGTGACGTGTTC 223 43 1484 Antisense
Sequence Source Affymetrix Proprietary Database