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[187370_at]

Description C04E7.1 /REP_DB=WormBase Gene ID /WP=CE03918 /TR=SW:Q11192 /GB=AAA82330.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 48      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 26.7
(-2.6)
A 		53
(-0.1)
A 		86.7
(3)
M 		22.3
(-3)
A 		64
B 31.8
(-0.9)
A 		63.8
(1.7)
A 		78.9
(3)
A 		7.2
(-3)
A 		72
C 28.5
(-3)
A 		87.4
(1.8)
P 		77.1
(1)
A 		102.1
(3)
A 		74
avr 29
(-3) 		68.1
(1.5) 		80.9
(3) 		43.9
(-1.3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 38.9
(-0.1)
A 		31.1
(-1)
A 		65.5
(3)
M 		27.5
(-1.5)
A 		14.4
(-3)
A 		32.9
(-0.8)
A 		51
B 45.9
(1.2)
A 		31.9
(-1.6)
A 		54.9
(3)
A 		41.1
(0.3)
A 		31.3
(-1.7)
P 		24.7
(-3)
A 		30
C 52.7
(0.8)
P 		46.1
(-0.1)
A 		68.2
(3)
A 		29.6
(-2.4)
A 		48.8
(0.3)
A 		25.1
(-3)
A 		43
avr 45.8
(0.1) 		36.4
(-1.5) 		62.9
(3) 		32.7
(-2.1) 		31.5
(-2.3) 		27.6
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 9.7
(-1)
A 		11.5
(-0.5)
A 		22.7
(3)
M 		3.3
(-3)
A 		19
B 10.1
(0.1)
A 		15.8
(2.1)
A 		18.3
(3)
A 		1.5
(-3)
A 		17
C 9.4
(-3)
A 		25.1
(2.4)
P 		26.9
(3)
A 		17.2
(-0.3)
A 		18
avr 9.7
(-2.1) 		17.5
(1) 		22.6
(3) 		7.3
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.2
(-1.3)
A 		11.1
(1.1)
A 		14.3
(3)
M 		7
(-1.4)
A 		4.3
(-3)
A 		8
(-0.8)
A 		10
B 16
(3)
A 		10.6
(-1.8)
A 		13.3
(0.6)
A 		10.9
(-1.5)
A 		12.7
(0.1)
P 		9.2
(-3)
A 		7
C 19.5
(3)
P 		14.1
(0.6)
A 		17.4
(2.1)
A 		6
(-3)
A 		15.8
(1.4)
A 		8.4
(-1.9)
A 		14
avr 14.2
(2.3) 		11.9
(0.3) 		15
(3) 		8
(-3) 		10.9
(-0.5) 		8.5
(-2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18485
Sequence Type Exemplar sequence
Representative Public ID C04E7.1 NCBI
Target Description C04E7.1 /REP_DB=WormBase Gene ID /WP=CE03918 /TR=SW:Q11192 /GB=AAA82330.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075690 NCBI Caenorhabditis elegans C04E7.1 (C04E7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000030880 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:358673:361087:1 11/11 None
C04E7.1 ENSEMBL cdna:known chromosome:CEL140:X:358673:360198:1 gene:C04E7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030877 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:358672-360198(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E7.1
Entrez Gene 182205 Entrez gene
SwissProt Q11192 EMBL-EBI
WormBase CE03918 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82330 Hypothetical protein C04E7.1 [Caenorhabditis elegans] ref|NP_508091.1| C04E7.1 [Caenorhabditis elegans] sp|Q11192|YX21_CAEEL Hypothetical protein C04E7.1 in chromosome X 3.0E-52
blast AAA82330 Hypothetical protein C04E7.1 [Caenorhabditis elegans] ref|NP_508091.1| C04E7.1 [Caenorhabditis elegans] sp|Q11192|YX21_CAEEL Hypothetical protein C04E7.1 in chromosome X 8.0E-52
Sequence
Target Sequence 
>C. ELEGANS:187370_AT
gcttcgggattctgagcgtgctgacctcgagcagatgcatggtcttatcaagcgcaagat
tcgctatcaggtgtcactcaactctcatgatccggccataaataggaagctcgaggctta
ccgttcgtttcttgtcagaataatgcacattctgcgtttggagacatgcctgctgcatca
atcggcaagccgcaaaatgatccgcgccgaaattcgtcaactccgcgagcaagaaaaatg
ccttatcgaaattgttgccgaccgtcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCGGGATTCTGAGCGTGCTGAC 258 305 21 Antisense
CGTGCTGACCTCGAGCAGATGCATG 415 245 37 Antisense
AGATTCGCTATCAGGTGTCACTCAA 651 65 77 Antisense
CAACTCTCATGATCCGGCCATAAAT 68 189 99 Antisense
TAGGAAGCTCGAGGCTTACCGTTCG 571 645 123 Antisense
CTTACCGTTCGTTTCTTGTCAGAAT 634 219 137 Antisense
TGCGTTTGGAGACATGCCTGCTGCA 280 579 173 Antisense
TGCTGCATCAATCGGCAAGCCGCAA 659 581 191 Antisense
CAAGCCGCAAAATGATCCGCGCCGA 353 185 206 Antisense
AATTCGTCAACTCCGCGAGCAAGAA 677 175 231 Antisense
TATCGAAATTGTTGCCGACCGTCCA 31 659 264 Antisense
Sequence Source Affymetrix Proprietary Database