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[187369_s_at]

Description C32D5.3 /REP_DB=WormBase Gene ID /WP=CE01843 /TR=SW:Q09263 /GB=AAC46791.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 43      4grp_high_8_8 > 40      6grp_highest_nonorm > 41      6grp_total > 35      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 478
1 2 3 4 range
A 1021.3
(3)
P 		612.4
(-2.2)
P 		638.4
(-1.8)
P 		546.4
(-3)
P 		475
B 1024.6
(3)
P 		573.7
(-3)
P 		649.3
(-2)
P 		608.8
(-2.5)
P 		451
C 1001.1
(3)
P 		582.8
(-3)
P 		674.3
(-1.7)
P 		588.1
(-2.9)
P 		418
avr 1015.7
(3) 		589.6
(-2.9) 		654
(-2) 		581.1
(-3) 		435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 583
1 2 3 4 5 6 range
A 811.3
(0.1)
P 		956
(3)
P 		705.9
(-2.1)
P 		692.5
(-2.4)
P 		661.5
(-3)
P 		763.6
(-0.9)
P 		295
B 952.1
(3)
P 		930.4
(2.7)
P 		826.2
(1)
P 		698.1
(-1.1)
P 		579.5
(-3)
P 		748.4
(-0.3)
P 		373
C 1100.2
(3)
P 		848.7
(0.4)
P 		861.9
(0.5)
P 		517.4
(-3)
P 		630.5
(-1.8)
P 		776.8
(-0.3)
P 		583
avr 954.5
(3) 		911.7
(2.2) 		798
(0.2) 		636
(-2.8) 		623.8
(-3) 		762.9
(-0.5) 		331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 292
1 2 3 4 range
A 371.9
(3)
P 		132.9
(-1.9)
P 		166.9
(-1.2)
P 		80
(-3)
P 		292
B 326.7
(3)
P 		141.7
(-2.6)
P 		150.4
(-2.4)
P 		129.7
(-3)
P 		197
C 331.4
(3)
P 		167.6
(-1.2)
P 		235
(0.5)
P 		99.2
(-3)
P 		232
avr 343.3
(3) 		147.4
(-1.9) 		184.1
(-1) 		103
(-3) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 149.6
(-3)
P 		340
(3)
P 		153.7
(-2.9)
P 		175.6
(-2.2)
P 		199.6
(-1.4)
P 		185.9
(-1.9)
P 		190
B 331.3
(3)
P 		309.7
(2.1)
P 		200.6
(-2.4)
P 		184.9
(-3)
P 		235.4
(-0.9)
P 		279.1
(0.9)
P 		146
C 407.8
(3)
P 		259
(0.1)
P 		219.4
(-0.7)
P 		104
(-3)
P 		204
(-1)
P 		260
(0.1)
P 		304
avr 296.2
(2.7) 		302.9
(3) 		191.2
(-1.5) 		154.8
(-3) 		213
(-0.6) 		241.7
(0.5) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187369_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5520
Sequence Type Exemplar sequence
Representative Public ID C32D5.3 NCBI
Target Description C32D5.3 /REP_DB=WormBase Gene ID /WP=CE01843 /TR=SW:Q09263 /GB=AAC46791.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062868 NCBI Caenorhabditis elegans C32D5.3 (C32D5.3) mRNA, complete cds. 11/11 None
SNAP00000026825 ENSEMBL cdna:SNAP chromosome:CEL140:II:6318130:6322741:-1 11/11 None
C32D5.3 ENSEMBL cdna:known chromosome:CEL140:II:6318035:6321105:-1 gene:C32D5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026839 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6318126-6321019(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32D5.3
Entrez Gene 174042 Entrez gene
SwissProt Q09263 EMBL-EBI
WormBase CE01843 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.10628.3.S1_S_AT similar to KIAA0953 protein gga
Protein Similarities
Method ID Description E-Value
blast AAC46791 Hypothetical protein C32D5.3 [Caenorhabditis elegans] ref|NP_495269.1| C32D5.3 [Caenorhabditis elegans] sp|Q09263|YQD3_CAEEL Hypothetical protein C32D5.3 in chromosome II 0.0
blast CAE59290 Hypothetical protein CBG02625 [Caenorhabditis briggsae] 0.0
blast AAC46792 Hypothetical protein C32D5.4 [Caenorhabditis elegans] ref|NP_495270.1| C32D5.4 [Caenorhabditis elegans] sp|Q09264|YQD4_CAEEL Hypothetical protein C32D5.4 in chromosome II 1.0E-156
blast XP_689853 PREDICTED: similar to RIKEN cDNA C920006C10 [Danio rerio] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:187369_S_AT
agatcaaaccttgttgttcaacgctgaagatattgcagagtcactaaaagcttctggaaa
agatgcgacacgactattcgttccttttaattttaatatgaatggacgaaagaatgatgg
cagtggtgatcaatggcaaaatgatacaccaaactttgattcgactgatggaagagaatc
accgagcggctataaaacagttggaattgatgatgtttcggttgatatgtcagttgactg
gacaccgcctgtgagcagaaaacaaagccgtagaaatactatattttcaattgtaaatcc
tccgaaactgaatgcgtcaactgtagatgatctcaaagcttatgcaaatgccacgtttga
tcctatcgaggaaggtcggaaagagaaggagctgactggaagtattttatccgaaattcg
aaataccgattttgaggaacgcgtgaacaccaatgaatctctgaatgaaaaaagcgatct
gagcaagtcaattgcacgtcttcttgtcagaaatggggagatgacaagagtccgagacat
tggtagaccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATCAAACCTTGTTGTTCAACGCT 229 61 1992 Antisense
GCGACACGACTATTCGTTCCTTTTA 366 287 2056 Antisense
ATGGAAGAGAATCACCGAGCGGCTA 111 49 2159 Antisense
TATGTCAGTTGACTGGACACCGCCT 60 657 2217 Antisense
GGACACCGCCTGTGAGCAGAAAACA 94 527 2231 Antisense
GAATGCGTCAACTGTAGATGATCTC 330 331 2301 Antisense
ATGCCACGTTTGATCCTATCGAGGA 458 41 2339 Antisense
TACCGATTTTGAGGAACGCGTGAAC 419 649 2415 Antisense
ACGCGTGAACACCAATGAATCTCTG 180 91 2430 Antisense
GAGCAAGTCAATTGCACGTCTTCTT 51 391 2472 Antisense
GAGTCCGAGACATTGGTAGACCAGC 518 399 2519 Antisense
Sequence Source Affymetrix Proprietary Database