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[187367_at]

Description ZK1098.9 /REP_DB=WormBase Gene ID /WP=CE00371 /TR=SW:P34608 /GB=CAA80138.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 41.7
(-3)
A 		73.5
(-1.1)
A 		47.1
(-2.7)
A 		139.9
(3)
P 		98
B 21.4
(-3)
A 		61.3
(1)
A 		37.7
(-1.4)
A 		82
(3)
P 		61
C 43.9
(-2.8)
A 		76.4
(-1.1)
A 		40.8
(-3)
A 		152
(3)
P 		111
avr 35.7
(-3) 		70.4
(-0.7) 		41.9
(-2.6) 		124.6
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 55.8
(-1.4)
A 		14.4
(-2.9)
A 		50.7
(-1.6)
A 		12.4
(-3)
A 		96.1
(0.1)
P 		176.5
(3)
P 		164
B 28.2
(-2.9)
A 		37.7
(-2.2)
A 		61.2
(-0.6)
A 		26.4
(-3)
A 		82.6
(0.9)
P 		112.9
(3)
P 		87
C 51.9
(-0.3)
A 		60.4
(0.3)
A 		31
(-1.6)
A 		10.3
(-3)
A 		101.6
(3)
P 		81
(1.6)
P 		91
avr 45.3
(-1.4) 		37.5
(-1.8) 		47.6
(-1.3) 		16.4
(-3) 		93.4
(1.3) 		123.5
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 15.2
(-0.9)
A 		15.9
(-0.4)
A 		12.3
(-3)
A 		20.5
(3)
P 		8
B 6.8
(-3)
A 		15.2
(1.7)
A 		8.7
(-1.9)
A 		17.5
(3)
P 		11
C 14.5
(-2.8)
A 		22
(1.1)
A 		14.2
(-3)
A 		25.6
(3)
P 		11
avr 12.2
(-2.7) 		17.7
(0.8) 		11.7
(-3) 		21.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 10.3
(-1.9)
A 		5.1
(-2.7)
A 		11
(-1.8)
A 		3.2
(-3)
A 		29
(0.9)
P 		43
(3)
P 		40
B 9.8
(-2.5)
A 		12.6
(-2)
A 		14.8
(-1.7)
A 		7
(-3)
A 		33.5
(1.5)
P 		42.1
(3)
P 		35
C 19.2
(0.3)
A 		18.4
(0.2)
A 		7.9
(-1.9)
A 		2.1
(-3)
A 		32.9
(3)
P 		27.1
(1.9)
P 		31
avr 13.1
(-1.4) 		12
(-1.6) 		11.2
(-1.7) 		4.1
(-3) 		31.8
(2) 		37.4
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7118
Sequence Type Exemplar sequence
Representative Public ID ZK1098.9 NCBI
Target Description ZK1098.9 /REP_DB=WormBase Gene ID /WP=CE00371 /TR=SW:P34608 /GB=CAA80138.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066706 NCBI Caenorhabditis elegans ZK1098.9 (ZK1098.9) mRNA, complete cds. 11/11 None
GENEFINDER00000005031 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9544347:9545764:1 11/11 None
SNAP00000005018 ENSEMBL cdna:SNAP chromosome:CEL140:III:9545221:9545764:1 10/11 None
ZK1098.9 ENSEMBL cdna:known chromosome:CEL140:III:9544347:9545764:1 gene:ZK1098.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022563 1/11 Cross Hyb Matching Probes None
SNAP00000005017 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9544342-9545760(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1098.9
Entrez Gene 191524 Entrez gene
SwissProt P34608 EMBL-EBI
WormBase CE00371 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80138 Hypothetical protein ZK1098.9 [Caenorhabditis elegans] ref|NP_499107.1| ZK1098.9 [Caenorhabditis elegans] sp|P34608|YO69_CAEEL Hypothetical protein ZK1098.9 in chromosome III 1.0E-84
blast CAA80138 Hypothetical protein ZK1098.9 [Caenorhabditis elegans] ref|NP_499107.1| ZK1098.9 [Caenorhabditis elegans] sp|P34608|YO69_CAEEL Hypothetical protein ZK1098.9 in chromosome III 2.0E-79
blast CAA80138 Hypothetical protein ZK1098.9 [Caenorhabditis elegans] ref|NP_499107.1| ZK1098.9 [Caenorhabditis elegans] sp|P34608|YO69_CAEEL Hypothetical protein ZK1098.9 in chromosome III 3.0E-61
blast CAE65182 Hypothetical protein CBG10055 [Caenorhabditis briggsae] 4.0E-26
blast CAE65182 Hypothetical protein CBG10055 [Caenorhabditis briggsae] 2.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499107.1 5 15-37,88-110,114-133,146-168,183-205
ZK1098.9 5 15-37,88-110,114-133,146-168,183-205
GENEFINDER00000005031 5 15-37,106-128,138-160,173-195,210-232
SNAP00000005018 3 20-42,62-84,97-119
Sequence
Target Sequence 
>C. ELEGANS:187367_AT
tagtttcggctgtcttcggaggtatcggaatcatcactacaatcgtgttcgtgattctga
cagttcttcattcaaaaagtgcggtttgtaaacctgcaggcaaagaagacatgaaaaaac
tgaacggtatcgaaggaatgcaaacgatcaaagaagaatgtggaggatcaactgaaacat
cctcgtcgaaaccgaagaaaaaagccaagaaagaaatgattagtgtgactgttctactcc
agggaactattccaatggggtacgtatctggactcgcgtcattttggatgctctcagcag
gtagcgttttcctcgtactcgcagtcatcacattcatcgctctgttgtttttgagtcgat
ctaaatgcatgttggcaatgagccaaagaaaattggccatctatcatgctccagcaccag
tcacatcgttgctttcgctcatcttcttcatcgtgtacacattcagtgccaaagctcccc
acgagcatacagcaattaaaaactgcattgtgcttctggatgtcggagtgggaattgttc
tgatgatttctctggtgcaagtgcttctagcgttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTTTCGGCTGTCTTCGGAGGTAT 174 651 56 Antisense
TAGTGTGACTGTTCTACTCCAGGGA 6 655 276 Antisense
TGGACTCGCGTCATTTTGGATGCTC 40 549 324 Antisense
TCAGCAGGTAGCGTTTTCCTCGTAC 651 605 349 Antisense
TCATCACATTCATCGCTCTGTTGTT 328 621 380 Antisense
AAATTGGCCATCTATCATGCTCCAG 227 115 445 Antisense
CAGCACCAGTCACATCGTTGCTTTC 141 205 467 Antisense
TCATCTTCTTCATCGTGTACACATT 37 619 494 Antisense
TACACATTCAGTGCCAAAGCTCCCC 292 643 511 Antisense
ACTGCATTGTGCTTCTGGATGTCGG 144 99 557 Antisense
CTGGTGCAAGTGCTTCTAGCGTTCC 52 241 607 Antisense
Sequence Source Affymetrix Proprietary Database