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[187364_at]

Description B0302.2 /REP_DB=WormBase Gene ID /WP=CE03867 /TR=SW:Q10926 /GB=AAA82368.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 1.5
(-3)
A 		2.7
(3)
A 		1.5
(-3)
A 		1.5
(-3)
A 		1
B 2.3
(1.9)
A 		0.8
(-2.2)
A 		0.5
(-3)
A 		2.7
(3)
A 		2
C 5.9
(-2.2)
A 		1.9
(-2.8)
A 		0.7
(-3)
A 		42
(3)
A 		41
avr 3.2
(-2) 		1.8
(-2.6) 		0.9
(-3) 		15.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 16.3
(3)
A 		3.3
(-2)
A 		4
(-1.7)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		0.9
(-2.9)
A 		16
B 1.2
(-2.3)
A 		1.5
(-1.6)
A 		0.9
(-3)
A 		3.4
(3)
A 		1.4
(-1.8)
A 		1.5
(-1.6)
A 		3
C 0.7
(-3)
A 		1
(-1.6)
A 		2
(3)
A 		0.9
(-2.1)
A 		0.8
(-2.5)
A 		1.5
(0.7)
A 		1
avr 6.1
(3) 		1.9
(-1.9) 		2.3
(-1.5) 		1.6
(-2.3) 		1
(-3) 		1.3
(-2.6) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.5
(1.5)
A 		0.6
(3)
A 		0.4
(0)
A 		0.2
(-3)
A 		0
B 0.7
(3)
A 		0.2
(-2)
A 		0.1
(-3)
A 		0.6
(2)
A 		1
C 2
(-1.5)
A 		0.6
(-2.7)
A 		0.3
(-3)
A 		7.1
(3)
A 		7
avr 1.1
(-0.9) 		0.5
(-2.5) 		0.3
(-3) 		2.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3
(3)
A 		1.2
(-0.7)
A 		0.9
(-1.3)
A 		0.1
(-3)
A 		0.2
(-2.8)
A 		0.2
(-2.8)
A 		3
B 0.4
(-1.3)
A 		0.5
(-0.4)
A 		0.2
(-3)
A 		0.9
(3)
A 		0.6
(0.4)
A 		0.6
(0.4)
A 		1
C 0.3
(-1)
A 		0.3
(-1)
A 		0.5
(3)
A 		0.2
(-3)
A 		0.3
(-1)
A 		0.5
(3)
A 		0
avr 1.2
(3) 		0.7
(-0.8) 		0.5
(-2.3) 		0.4
(-3) 		0.4
(-3) 		0.4
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187364_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17652
Sequence Type Exemplar sequence
Representative Public ID B0302.2 NCBI
Target Description B0302.2 /REP_DB=WormBase Gene ID /WP=CE03867 /TR=SW:Q10926 /GB=AAA82368.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078381(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078381 NCBI Caenorhabditis elegans B0302.2 (B0302.2) mRNA, complete cds. 11/11 None
B0302.2 ENSEMBL cdna:known chromosome:CEL140:X:17178424:17178904:1 gene:B0302.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034063 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17178423-17178904(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0302.2
Entrez Gene 181911 Entrez gene
SwissProt Q10926 EMBL-EBI
WormBase CE03867 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82368 Hypothetical protein B0302.2 [Caenorhabditis elegans] ref|NP_510782.1| B0302.2 [Caenorhabditis elegans] sp|Q10926|YWR2_CAEEL Hypothetical protein B0302.2 in chromosome X 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:187364_AT
atgcagttctcaaacgtacaaaacctaggcatattcaaagcacattattccgactgtatt
tttggtcccacttcattcgccctacctgctacagctactaagaaatgtacgtatcgtcaa
aattggaacgattctccaatgcaacctggtacgggattatccttcgatatttcacaaatt
ttgaagcaaggatctgatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAGTTCTCAAACGTACAAAACC 486 41 13 Antisense
TCAAACGTACAAAACCTAGGCATAT 623 627 22 Antisense
AACCTAGGCATATTCAAAGCACATT 422 145 34 Antisense
AAAGCACATTATTCCGACTGTATTT 660 123 49 Antisense
GACTGTATTTTTGGTCCCACTTCAT 612 375 64 Antisense
CCCTACCTGCTACAGCTACTAAGAA 687 257 92 Antisense
GCTACTAAGAAATGTACGTATCGTC 235 279 106 Antisense
AACGATTCTCCAATGCAACCTGGTA 25 145 139 Antisense
GCAACCTGGTACGGGATTATCCTTC 147 321 153 Antisense
TTATCCTTCGATATTTCACAAATTT 345 681 169 Antisense
AATTTTGAAGCAAGGATCTGATCCA 331 173 189 Antisense
Sequence Source Affymetrix Proprietary Database