[Home] | [Total List]

[187363_at]

Description B0034.4 /REP_DB=WormBase Gene ID /WP=CE02412 /TR=SW:Q10912 /GB=AAK31385.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 32.9
(-3)
A 		33.5
(-3)
A 		67.7
(-1.7)
A 		192
(3)
A 		159
B 43.7
(0.1)
A 		23.6
(-2)
A 		13.7
(-3)
A 		71
(3)
A 		57
C 64.6
(1.2)
A 		21.6
(-2.2)
A 		12.1
(-3)
A 		86.3
(3)
A 		74
avr 47.1
(-1.6) 		26.2
(-3) 		31.2
(-2.7) 		116.4
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 18.2
(-1.4)
A 		38.9
(2.6)
A 		10.3
(-2.9)
A 		26.1
(0.1)
A 		41.1
(3)
A 		9.6
(-3)
A 		32
B 83.9
(3)
A 		31.6
(-1.5)
A 		19.2
(-2.5)
A 		13.9
(-3)
A 		31.3
(-1.5)
A 		28.7
(-1.7)
A 		70
C 38.4
(3)
A 		10.9
(-3)
A 		13.5
(-2.4)
A 		20.7
(-0.9)
A 		28.7
(0.9)
A 		20.7
(-0.9)
A 		28
avr 46.8
(3) 		27.1
(-0.6) 		14.3
(-3) 		20.2
(-1.9) 		33.7
(0.6) 		19.7
(-2) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 12
(-1.6)
A 		7.3
(-3)
A 		17.7
(-0)
A 		28.1
(3)
A 		21
B 13.9
(2.4)
A 		5.8
(-1.7)
A 		3.2
(-3)
A 		15.1
(3)
A 		12
C 21.4
(3)
A 		6.2
(-2.3)
A 		4.2
(-3)
A 		14.5
(0.6)
A 		17
avr 15.8
(1.4) 		6.4
(-3) 		8.4
(-2.1) 		19.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 3.3
(-2.4)
A 		13.8
(3)
A 		2.2
(-3)
A 		6.6
(-0.7)
A 		12.4
(2.3)
A 		2.3
(-2.9)
A 		12
B 29.2
(3)
A 		10.5
(-1.4)
A 		4.7
(-2.8)
A 		3.7
(-3)
A 		12.7
(-0.9)
A 		10.7
(-1.4)
A 		26
C 14.2
(3)
A 		3.3
(-3)
A 		3.4
(-2.9)
A 		4.2
(-2.5)
A 		9.3
(0.3)
A 		6.9
(-1)
A 		11
avr 15.6
(3) 		9.2
(-0.1) 		3.4
(-3) 		4.8
(-2.3) 		11.5
(1) 		6.6
(-1.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187363_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5796
Sequence Type Exemplar sequence
Representative Public ID B0034.4 NCBI
Target Description B0034.4 /REP_DB=WormBase Gene ID /WP=CE02412 /TR=SW:Q10912 /GB=AAK31385.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062790 NCBI Caenorhabditis elegans B0034.4 (B0034.4) mRNA, complete cds. 11/11 None
SNAP00000014838 ENSEMBL cdna:SNAP chromosome:CEL140:II:5968095:5968928:-1 11/11 None
GENEFINDER00000014845 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5968095:5968928:-1 11/11 None
B0034.4 ENSEMBL cdna:known chromosome:CEL140:II:5968095:5968928:-1 gene:B0034.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5968091-5968925(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0034.4
Entrez Gene 181819 Entrez gene
SwissProt Q10912 EMBL-EBI
WormBase CE02412 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31385 Hypothetical protein B0034.4 [Caenorhabditis elegans] ref|NP_495191.1| B0034.4 [Caenorhabditis elegans] sp|Q10912|YSP4_CAEEL Hypothetical protein B0034.4 in chromosome III 1.0E-104
blast CAE59033 Hypothetical protein CBG02313 [Caenorhabditis briggsae] 4.0E-10
Sequence
Target Sequence 
>C. ELEGANS:187363_AT
catcgtcaaatgttctgctttctccaaaaagcccagcgagagagccaagcctgcagccgt
gaaaaaagctgtggaagataagcaaccagtgaaagtgacagctttcgaacaagcttcttt
gaacgaagacaaggctgaggcgatgtcaaatattgagccatctcccaagatctcaaactc
caccgtgcctacagctcctactccaaagaaggaaaagaaggtggtggccacaaccaaaaa
aacggaaagatctgtagctcagggaccaccgctagtttcggaacatattaaagatgagaa
gaaaatgccatcggttcataagccaattcgaaaaggatcgatttacgcgaatgaattatt
gactgaaaaaccattgactgacactgaaccagaacttcatccagacaatcatgttgtgaa
ggccaaatcgccaaaaccagttgctcgaactccaactgcacgccatcgtaatgctctgaa
accaggaaaaatcaatgataaaagtgatgatacacttcatgatgctccatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCGTCAAATGTTCTGCTTTCTCC 317 211 54 Antisense
AAAAGCCCAGCGAGAGAGCCAAGCC 523 131 80 Antisense
GCCAAGCCTGCAGCCGTGAAAAAAG 458 277 97 Antisense
TGAGCCATCTCCCAAGATCTCAAAC 21 571 207 Antisense
CCTACAGCTCCTACTCCAAAGAAGG 251 269 241 Antisense
TCAGGGACCACCGCTAGTTTCGGAA 168 601 312 Antisense
TGCCATCGGTTCATAAGCCAATTCG 272 583 359 Antisense
AAAACCATTGACTGACACTGAACCA 542 129 420 Antisense
ACCAGAACTTCATCCAGACAATCAT 328 85 441 Antisense
GCCAAATCGCCAAAACCAGTTGCTC 449 275 475 Antisense
GATACACTTCATGATGCTCCATCGA 651 423 562 Antisense
Sequence Source Affymetrix Proprietary Database