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[187362_at]

Description B0302.4 /REP_DB=WormBase Gene ID /WP=CE03869 /TR=SW:Q10927 /GB=AAA82370.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 13.8
(-1.6)
A 		46.7
(3)
A 		3.6
(-3)
A 		3.4
(-3)
A 		43
B 1.1
(-3)
A 		27.4
(1.5)
A 		36
(3)
A 		14
(-0.8)
A 		35
C 19.1
(-0.6)
A 		7.8
(-2.2)
A 		1.8
(-3)
A 		44.4
(3)
A 		43
avr 11.3
(-3) 		27.3
(3) 		13.8
(-2.1) 		20.6
(0.5) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.4
(-2)
A 		3.3
(-3)
A 		10.2
(0.3)
A 		15.9
(3)
A 		8.5
(-0.5)
A 		3.5
(-2.9)
A 		13
B 11.9
(1.1)
A 		16.4
(3)
A 		14.9
(2.4)
A 		2.4
(-3)
A 		9.5
(0)
A 		3.1
(-2.7)
A 		14
C 7.8
(1.1)
A 		8.3
(1.5)
A 		10.3
(3)
A 		2.5
(-2.8)
A 		4
(-1.7)
A 		2.2
(-3)
A 		8
avr 8.4
(0.7) 		9.3
(1.3) 		11.8
(3) 		6.9
(-0.3) 		7.3
(-0) 		2.9
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5
(-0.2)
A 		10.1
(3)
A 		0.9
(-2.8)
A 		0.5
(-3)
A 		10
B 0.4
(-3)
A 		6.8
(1.9)
A 		8.3
(3)
A 		3
(-1)
A 		8
C 6.3
(2)
A 		2.2
(-1.6)
A 		0.6
(-3)
A 		7.5
(3)
A 		7
avr 3.9
(-1.8) 		6.4
(3) 		3.3
(-3) 		3.7
(-2.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1
(-2.8)
A 		1.2
(-2.4)
A 		2.2
(-0.5)
A 		4
(3)
A 		2.6
(0.3)
A 		0.9
(-3)
A 		3
B 4.1
(1.3)
A 		5.5
(3)
A 		3.6
(0.7)
A 		0.6
(-3)
A 		3.9
(1)
A 		1.2
(-2.3)
A 		5
C 2.9
(3)
A 		2.5
(2)
A 		2.6
(2.3)
A 		0.5
(-3)
A 		1.3
(-1)
A 		0.7
(-2.5)
A 		2
avr 2.7
(1.9) 		3.1
(3) 		2.8
(2.2) 		1.7
(-0.8) 		2.6
(1.6) 		0.9
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187362_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17510
Sequence Type Exemplar sequence
Representative Public ID B0302.4 NCBI
Target Description B0302.4 /REP_DB=WormBase Gene ID /WP=CE03869 /TR=SW:Q10927 /GB=AAA82370.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078380
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0302.4 ENSEMBL cdna:known chromosome:CEL140:X:17176402:17176689:-1 gene:B0302.4 None
NM_078380 NCBI Caenorhabditis elegans B0302.4 (B0302.4) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17176399-17176689(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0302.4
Entrez Gene 181913 Entrez gene
SwissProt Q10927 EMBL-EBI
WormBase CE35210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82370 Hypothetical protein B0302.4 [Caenorhabditis elegans] ref|NP_510781.2| B0302.4 [Caenorhabditis elegans] sp|Q10927|YWR4_CAEEL Hypothetical protein B0302.4 in chromosome X 4.0E-13
Sequence
Target Sequence 
>C. ELEGANS:187362_AT
gaatcatggatcttttttcaaggctactcgtccgggtctagaccattgggtacgtttcat
ggctgcttactcgattctactggagcaagaaaaatcgatggcagactattttgctgtaaa
caacgacaagggcgcccgccaatgcgcagaaaatcagcacacacaacgtatcaggagaag
ttgtcatgctccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCATGGATCTTTTTTCAAGGCT 383 327 15 Antisense
GATCTTTTTTCAAGGCTACTCGTCC 105 419 23 Antisense
TACTCGTCCGGGTCTAGACCATTGG 330 647 39 Antisense
AGACCATTGGGTACGTTTCATGGCT 687 69 54 Antisense
GTTTCATGGCTGCTTACTCGATTCT 86 451 68 Antisense
GCTGCTTACTCGATTCTACTGGAGC 269 297 76 Antisense
ATCGATGGCAGACTATTTTGCTGTA 265 35 108 Antisense
TGTAAACAACGACAAGGGCGCCCGC 630 523 129 Antisense
GGCGCCCGCCAATGCGCAGAAAATC 28 541 145 Antisense
AAATCAGCACACACAACGTATCAGG 462 117 165 Antisense
TCAGGAGAAGTTGTCATGCTCCAGT 305 623 185 Antisense
Sequence Source Affymetrix Proprietary Database