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[187361_s_at]

Description F32A5.6 /REP_DB=WormBase Gene ID /WP=CE28290 /TR=SW:Q19951 /GB=AAC46665.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 96      6grp_total > 67      4grp_total > 08      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3305
1 2 3 4 range
A 604.6
(-3)
P 		835.9
(-2.4)
P 		1206.3
(-1.3)
P 		2753.7
(3)
P 		2149
B 869
(-3)
P 		953.5
(-2.8)
P 		1283.9
(-1.8)
P 		3017.6
(3)
P 		2149
C 576.1
(-3)
P 		738.6
(-2.7)
P 		1328.2
(-1.6)
P 		3880.6
(3)
P 		3305
avr 683.2
(-3) 		842.7
(-2.6) 		1272.8
(-1.6) 		3217.3
(3) 		2534

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1147
1 2 3 4 5 6 range
A 913.6
(-0.8)
P 		595.7
(-3)
P 		648.4
(-2.6)
P 		682.2
(-2.4)
P 		609.8
(-2.9)
P 		1448.9
(3)
P 		853
B 907.7
(-1.2)
P 		581.3
(-3)
P 		624.5
(-2.8)
P 		626.2
(-2.8)
P 		711.7
(-2.3)
P 		1667.2
(3)
P 		1086
C 658.5
(-2.3)
P 		665.5
(-2.2)
P 		651.7
(-2.3)
P 		574
(-2.7)
P 		519.9
(-3)
P 		1646
(3)
P 		1126
avr 826.6
(-1.7) 		614.2
(-3) 		641.5
(-2.8) 		627.5
(-2.9) 		613.8
(-3) 		1587.4
(3) 		974
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 473
1 2 3 4 range
A 220.1
(-2)
P 		181.4
(-3)
P 		315.4
(0.6)
P 		403.1
(3)
P 		222
B 277.1
(-2.4)
P 		235.5
(-3)
P 		297.5
(-2.1)
P 		643
(3)
P 		408
C 190.7
(-3)
P 		212.4
(-2.7)
P 		462.9
(0.5)
P 		654.3
(3)
P 		464
avr 229.3
(-2.7) 		209.8
(-3) 		358.6
(-0.5) 		566.8
(3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 168.4
(-2.2)
P 		211.9
(-1)
P 		141.2
(-3)
P 		173
(-2.1)
P 		184
(-1.8)
P 		352.8
(3)
P 		212
B 315.8
(-0.9)
P 		193.5
(-2.5)
P 		151.6
(-3)
P 		165.9
(-2.8)
P 		289.2
(-1.2)
P 		621.7
(3)
P 		470
C 244.1
(-1.2)
P 		203.1
(-1.8)
P 		165.9
(-2.3)
P 		115.4
(-3)
P 		168.2
(-2.3)
P 		551
(3)
P 		436
avr 242.8
(-1.5) 		202.8
(-2.1) 		152.9
(-3) 		151.4
(-3) 		213.8
(-2) 		508.5
(3) 		357
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187361_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5485
Sequence Type Exemplar sequence
Representative Public ID F32A5.6 NCBI
Target Description F32A5.6 /REP_DB=WormBase Gene ID /WP=CE28290 /TR=SW:Q19951 /GB=AAC46665.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063112(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063112 NCBI Caenorhabditis elegans PeRoXisome assembly factor family member (prx-13) (prx-13) mRNA, complete cds. 11/11 None
SNAP00000015814 ENSEMBL cdna:SNAP chromosome:CEL140:II:7250157:7251934:-1 11/11 None
GENEFINDER00000015821 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7250157:7251934:-1 11/11 None
F32A5.6 ENSEMBL cdna:known chromosome:CEL140:II:7250143:7251941:-1 gene:F32A5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7250152-7251819(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol prx-13
Ensembl F32A5.6
Entrez Gene 174192 Entrez gene
SwissProt Q19951 EMBL-EBI
WormBase CE28290 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589010_AT similar to Peroxisomal membrane protein PEX13 (Peroxin-13) cfa
CANINE_2:CFA.18255.1.S1_S_AT similar to Peroxisomal membrane protein PEX13 (Peroxin-13) cfa
CANINE_2:CFAAFFX.5415.1.S1_S_AT similar to Peroxisomal membrane protein PEX13 (Peroxin-13) cfa
DROSOPHILA_2:1632704_AT dm
DROSGENOME1:152884_AT dm
CHICKEN:GGA.9815.1.S1_AT peroxisome biogenesis factor 13 gga
HG-U133_PLUS_2:205246_AT peroxisome biogenesis factor 13 hs
HG-U133A:205246_AT peroxisome biogenesis factor 13 hs
HG-FOCUS:205246_AT peroxisome biogenesis factor 13 hs
HG-U133A_2:205246_AT peroxisome biogenesis factor 13 hs
HU35KSUBC:RC_AA609671_AT peroxisome biogenesis factor 13 hs
HUGENEFL:U71374_AT peroxisome biogenesis factor 13 hs
U133_X3P:G4505722_3P_S_AT peroxisome biogenesis factor 13 hs
HG-U133_PLUS_2:1556009_AT peroxisome biogenesis factor 13 hs
HG-U95AV2:37464_AT peroxisome biogenesis factor 13 hs
U133_X3P:HS2.424019.1.S1_3P_X_AT Peroxisome biogenesis factor 13 hs
U133_X3P:HS2.424019.1.S1_3P_AT Peroxisome biogenesis factor 13 hs
U133_X3P:1558163_3P_AT Peroxisome biogenesis factor 13 hs
HG-U133_PLUS_2:1558163_AT Peroxisome biogenesis factor 13 hs
HG-U133_PLUS_2:1558164_S_AT Peroxisome biogenesis factor 13 hs
HG-U95D:81945_AT Peroxisome biogenesis factor 13 hs
HG-U133_PLUS_2:232945_AT Peroxisome biogenesis factor 13 hs
HG-U133B:232945_AT Peroxisome biogenesis factor 13 hs
HG-U133_PLUS_2:244560_AT Peroxisome biogenesis factor 13 hs
HG-U133B:244560_AT Peroxisome biogenesis factor 13 hs
HG-U95E:69622_AT Peroxisome biogenesis factor 13 hs
U133_X3P:HS.249595.0.A1_3P_AT Peroxisome biogenesis factor 13 hs
U133_X3P:HS.293914.0.S1_3P_AT Peroxisome biogenesis factor 13 hs
MU11KSUBA:AA209554_S_AT peroxisomal biogenesis factor 13 mm
MG-U74AV2:94491_AT peroxisomal biogenesis factor 13 mm
MG-U74BV2:116684_AT peroxisomal biogenesis factor 13 mm
MG-U74BV2:115508_AT peroxisomal biogenesis factor 13 mm
MG-U74CV2:170946_R_AT peroxisomal biogenesis factor 13 mm
MG-U74CV2:170553_AT peroxisomal biogenesis factor 13 mm
MOE430A:1422471_AT peroxisomal biogenesis factor 13 mm
MOUSE430A_2:1422471_AT peroxisomal biogenesis factor 13 mm
MOUSE430_2:1422471_AT peroxisomal biogenesis factor 13 mm
MOE430A:1422472_AT peroxisomal biogenesis factor 13 mm
MOUSE430A_2:1422472_AT peroxisomal biogenesis factor 13 mm
MOUSE430_2:1422472_AT peroxisomal biogenesis factor 13 mm
MU19KSUBB:TC34104_AT Peroxisomal biogenesis factor 13, mRNA (cDNA clone MGC:35803 IMAGE:5343438) mm
RG-U34B:RC_AI012951_AT peroxisomal biogenesis factor 13 (predicted) rn
RAE230A:1374638_AT peroxisomal biogenesis factor 13 (predicted) rn
RAT230_2:1374638_AT peroxisomal biogenesis factor 13 (predicted) rn
RAE230B:1381116_AT Peroxisomal biogenesis factor 13 (predicted) rn
RAT230_2:1381116_AT Peroxisomal biogenesis factor 13 (predicted) rn
RAE230B:1397996_AT Peroxisomal biogenesis factor 13 (predicted) rn
RAT230_2:1397996_AT Peroxisomal biogenesis factor 13 (predicted) rn
YEAST_2:1777099_AT Integral peroxisomal membrane receptor for the PTS1 peroxisomal matrix protein signal recognition factor Pex5p, required for the translocation of peroxisomal matrix proteins, also interacts with Pex7p and Pex14p, contains a C-terminal SH3 domain Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16560 protein import into peroxisome matrix, docking inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5777 peroxisome inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46665 Peroxisome assembly factor protein 13 [Caenorhabditis elegans] ref|NP_495513.1| PeRoXisome assembly factor family member (prx-13) [Caenorhabditis elegans] sp|Q19951|PEX13_CAEEL Probable peroxisomal membrane protein PEX13 (Peroxin-13) 1.0E-139
blast T16233 hypothetical protein F32A5.6 - Caenorhabditis elegans 1.0E-137
blast CAE67581 Hypothetical protein CBG13114 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR007223 EMBL-EBI Peroxin 13, N-terminal 1.6E-90
Pfam IPR001452 EMBL-EBI SH3 9.2E-14
Sequence
Target Sequence 
>C. ELEGANS:187361_S_AT
gacgcagttgtcatcagtagttgtttctttggcagttttccgatgggtatatcgtttctg
gagatggctactggttatgttgaaattgaaaccagcaagttatgcaagcgctgctgaaat
ggcttggggaacatcacaaccgtatgccacagacgttcttggtgccacaagaactccagc
aagtgtcaactggcctgctgctctcttctgggttgttgcaattggaggaccatggctcat
ctatagatgtgtcagtcagatggtacaagctgctgaagagaagagaaaatgggcaactgg
agccgctccacattatactgctcaagcacttttcgactttcaagcctcaaatgagcaaga
gcttagcttcatgaatggagaaacgttaagagtggctccaaaagaagaacaacccagagt
tagaggatggcttttagcaagtgttgccgatggaagtcgtattggacttgttccaattaa
ctacgtcagaattgtcggaaaacaatcacaatctcctccacttactcaacagagcaattt
agacacatttgttaacgcttttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCAGTTGTCATCAGTAGTTGTT 187 381 351 Antisense
TCTTTGGCAGTTTTCCGATGGGTAT 463 603 376 Antisense
GTATGCCACAGACGTTCTTGGTGCC 1 455 492 Antisense
TCCAGCAAGTGTCAACTGGCCTGCT 140 589 525 Antisense
CTGCTCTCTTCTGGGTTGTTGCAAT 12 239 548 Antisense
GAGGACCATGGCTCATCTATAGATG 214 405 575 Antisense
AAAATGGGCAACTGGAGCCGCTCCA 493 133 636 Antisense
CCGCTCCACATTATACTGCTCAAGC 335 263 653 Antisense
TGCTCAAGCACTTTTCGACTTTCAA 401 579 669 Antisense
TCTCCTCCACTTACTCAACAGAGCA 319 611 862 Antisense
AGACACATTTGTTAACGCTTTTCCA 519 71 891 Antisense
Sequence Source Affymetrix Proprietary Database