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[187359_at]

Description F42G9.8 /REP_DB=WormBase Gene ID /WP=CE24966 /TR=SW:Q20351 /GB=AAK70644.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 37      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 143
(2.5)
P 		94.3
(-2.1)
P 		84.6
(-3)
A 		148.8
(3)
A 		64
B 115.8
(3)
P 		89.2
(0.8)
A 		68.5
(-1)
A 		44.4
(-3)
A 		71
C 100.7
(-0.5)
P 		158.8
(3)
M 		59.6
(-3)
A 		119.6
(0.6)
A 		99
avr 119.8
(3) 		114.1
(2.3) 		70.9
(-3) 		104.3
(1.1) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 140.2
(3)
A 		136.6
(2.8)
P 		123.8
(2.3)
A 		57.9
(-0.7)
M 		64.4
(-0.4)
P 		7
(-3)
A 		133
B 90.5
(-0.4)
P 		148.1
(3)
P 		101.8
(0.3)
P 		126.1
(1.7)
P 		45.4
(-3)
A 		51
(-2.7)
A 		103
C 112.9
(2.9)
P 		114.6
(3)
P 		59
(-0.3)
A 		75.2
(0.6)
A 		53
(-0.7)
A 		14.4
(-3)
A 		100
avr 114.5
(2) 		133.1
(3) 		94.9
(0.9) 		86.4
(0.4) 		54.3
(-1.3) 		24.1
(-3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 52.1
(3)
P 		20.5
(-3)
P 		22.1
(-2.7)
A 		21.8
(-2.8)
A 		32
B 36.9
(3)
P 		22
(-0.3)
A 		15.9
(-1.6)
A 		9.5
(-3)
A 		27
C 33.3
(0.1)
P 		45.6
(3)
M 		20.8
(-2.9)
A 		20.2
(-3)
A 		25
avr 40.8
(3) 		29.4
(0.1) 		19.6
(-2.4) 		17.2
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 25.8
(0.1)
A 		48.6
(3)
P 		27
(0.2)
A 		14.7
(-1.3)
M 		19.4
(-0.7)
P 		1.7
(-3)
A 		47
B 31.5
(-0.5)
P 		49.3
(3)
P 		24.7
(-1.8)
P 		33.4
(-0.1)
P 		18.5
(-3)
A 		19
(-2.9)
A 		31
C 41.8
(3)
P 		35
(1.9)
P 		15
(-1.3)
A 		15.1
(-1.3)
A 		17.2
(-1)
A 		4.8
(-3)
A 		37
avr 33
(1.1) 		44.3
(3) 		22.2
(-0.7) 		21.1
(-0.9) 		18.4
(-1.3) 		8.5
(-3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8153
Sequence Type Exemplar sequence
Representative Public ID F42G9.8 NCBI
Target Description F42G9.8 /REP_DB=WormBase Gene ID /WP=CE24966 /TR=SW:Q20351 /GB=AAK70644.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064855(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064855 NCBI Caenorhabditis elegans F42G9.8 (F42G9.8) mRNA, complete cds. 11/11 None
GENEFINDER00000038502 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:771271:772698:1 11/11 None
F42G9.8 ENSEMBL cdna:known chromosome:CEL140:III:771572:772698:1 gene:F42G9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038494 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:771571-772698(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42G9.8
Entrez Gene 185681 Entrez gene
SwissProt Q20351 EMBL-EBI
WormBase CE24966 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70644 Hypothetical protein F42G9.8 [Caenorhabditis elegans] ref|NP_497256.1| F42G9.8 [Caenorhabditis elegans] sp|Q20351|TPSB_CAEEL Putative protein-tyrosine sulfotransferase (Tyrosylprotein sulfotransferase) (TPST) 1.0E-150
blast CAE69201 Hypothetical protein CBG15241 [Caenorhabditis briggsae] 1.0E-138
blast CAE60048 Hypothetical protein CBG03560 [Caenorhabditis briggsae] 1.0E-65
blast CAE60048 Hypothetical protein CBG03560 [Caenorhabditis briggsae] 3.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR000863 EMBL-EBI Sulfotransferase 8.9E-38
Pfam IPR000863 EMBL-EBI Sulfotransferase 3.6E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038502 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:187359_AT
agcacagtgaactagcacctcgtctgtgcaacaaggatccatacaccgcattgtggcttc
cgactattcgccgactgtacccgaatgcaaagtttattctgatgattcgagatgctcgtg
ccgtagttcattcaatgatagaaagaaaagtaccagttgctgggtataatacgtctgatg
aaatttcaatgtttgttcagtggaatcaggagcttcgaaaaatgacttttcaatgcaata
atgcgccagggcaatgcataaaagtatattatgaacgactgattcaaaaacctgcggaag
aaatcctacgtatcaccaacttcctggatctgccattttcccagcaaatgctaagacatc
aagatttaattggagacgaagttgatttaaacgatcaagaattctctgcatcacaagtta
aaaactcgataaacactaaagccttaacctcgtggtttgattgttttagtgaagaaactc
tacgaaaacttgatgacgtggcaccttttttgggaattcttggatacgatacgtcgattt
caaaacccgattattccacatttgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACAGTGAACTAGCACCTCGTCT 543 75 188 Antisense
GATCCATACACCGCATTGTGGCTTC 85 417 223 Antisense
CTATTCGCCGACTGTACCCGAATGC 574 223 251 Antisense
TTCGAGATGCTCGTGCCGTAGTTCA 602 693 293 Antisense
GGAAGAAATCCTACGTATCACCAAC 115 531 483 Antisense
TACGTATCACCAACTTCCTGGATCT 179 649 494 Antisense
ATCTGCCATTTTCCCAGCAAATGCT 501 31 515 Antisense
ACGATCAAGAATTCTCTGCATCACA 79 95 578 Antisense
TAAAGCCTTAACCTCGTGGTTTGAT 231 149 624 Antisense
ATGACGTGGCACCTTTTTTGGGAAT 116 45 680 Antisense
AAAACCCGATTATTCCACATTTGCG 614 131 729 Antisense
Sequence Source Affymetrix Proprietary Database