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[187358_at]

Description F07F6.5 /REP_DB=WormBase Gene ID /WP=CE01897 /TR=SW:Q09304 /GB=AAC46778.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 57      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1355
1 2 3 4 range
A 2.1
(-3)
A 		851.4
(1.2)
P 		1210.8
(3)
P 		1.9
(-3)
A 		1209
B 1.2
(-3)
A 		1078.5
(1.8)
P 		1356.1
(3)
P 		7.9
(-3)
A 		1355
C 2.2
(-3)
A 		989.3
(1.7)
P 		1266.6
(3)
P 		1.6
(-3)
A 		1265
avr 1.8
(-3) 		973.1
(1.6) 		1277.8
(3) 		3.8
(-3) 		1276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1235
1 2 3 4 5 6 range
A 4.9
(-3)
A 		548.7
(0.3)
P 		614.5
(0.7)
P 		843.6
(2)
P 		1003.7
(3)
P 		506.4
(0)
P 		999
B 4.6
(-3)
A 		628.9
(0)
P 		570
(-0.2)
P 		657.3
(0.2)
P 		1235.6
(3)
P 		547.4
(-0.4)
P 		1231
C 0.9
(-3)
A 		616.2
(0.5)
P 		392.4
(-0.8)
P 		783.1
(1.4)
P 		1056.5
(3)
P 		566.6
(0.2)
P 		1056
avr 3.5
(-3) 		597.9
(0.3) 		525.6
(-0.1) 		761.3
(1.2) 		1098.6
(3) 		540.1
(-0.1) 		1095
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 0.8
(-3)
A 		184.8
(0.5)
P 		316.5
(3)
P 		0.3
(-3)
A 		316
B 0.4
(-3)
A 		266.4
(2.1)
P 		314.2
(3)
P 		1.7
(-3)
A 		314
C 0.7
(-3)
A 		284.4
(0.9)
P 		441.4
(3)
P 		0.3
(-3)
A 		441
avr 0.6
(-3) 		245.2
(1.1) 		357.4
(3) 		0.8
(-3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 502
1 2 3 4 5 6 range
A 0.9
(-3)
A 		195.2
(0.9)
P 		133.8
(-0.4)
P 		214
(1.2)
P 		302.9
(3)
P 		123.3
(-0.6)
P 		302
B 1.6
(-3)
A 		209.3
(-0.5)
P 		138.4
(-1.4)
P 		174.1
(-0.9)
P 		502
(3)
P 		204.1
(-0.6)
P 		500
C 0.3
(-3)
A 		188
(0.3)
P 		99.9
(-1.3)
P 		157.5
(-0.2)
P 		341.9
(3)
P 		189.7
(0.3)
P 		342
avr 0.9
(-3) 		197.5
(0.1) 		124
(-1.1) 		181.9
(-0.2) 		382.3
(3) 		172.4
(-0.3) 		381
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5598
Sequence Type Exemplar sequence
Representative Public ID F07F6.5 NCBI
Target Description F07F6.5 /REP_DB=WormBase Gene ID /WP=CE01897 /TR=SW:Q09304 /GB=AAC46778.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062630(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062630 NCBI Caenorhabditis elegans F07F6.5 (F07F6.5) mRNA, complete cds. 11/11 None
SNAP00000006560 ENSEMBL cdna:SNAP chromosome:CEL140:II:5435809:5436329:-1 11/11 None
GENEFINDER00000006572 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5435809:5436679:-1 10/11 None
F07F6.5 ENSEMBL cdna:known chromosome:CEL140:II:5435809:5436329:-1 gene:F07F6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5435806-5436327(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07F6.5
Entrez Gene 184148 Entrez gene
SwissProt Q09304 EMBL-EBI
WormBase CE01897 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE59104 Hypothetical protein CBG02399 [Caenorhabditis briggsae] 3.0E-74
blast AAC46778 Hypothetical protein F07F6.5 [Caenorhabditis elegans] ref|NP_495031.1| F07F6.5 [Caenorhabditis elegans] sp|Q09304|YQP5_CAEEL Hypothetical protein F07F6.5 in chromosome III 1.0E-71
blast AAC46778 Hypothetical protein F07F6.5 [Caenorhabditis elegans] ref|NP_495031.1| F07F6.5 [Caenorhabditis elegans] sp|Q09304|YQP5_CAEEL Hypothetical protein F07F6.5 in chromosome III 8.0E-68
blast CAE59104 Hypothetical protein CBG02399 [Caenorhabditis briggsae] 2.0E-67
blast AAB69889 Hypothetical protein C29G2.6 [Caenorhabditis elegans] ref|NP_503708.1| C29G2.6 [Caenorhabditis elegans] 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:187358_AT
atgcaagcactgtcattatgctttggagcaaatgagcgcattggctcagggagagaaaac
ttctggactgtgcccaaaacttgaaacctgtgttttcaattgccttactgaagatgtatc
aaaagtattatcttgtgttgcaactcggtgcaatgttcactgttatgatggagattgccc
atcttgcaaaatgatttctagacgcattttttccaatatctgcaagcaacattcaatgac
aactcaaccacaaattaaatatgaaggaacttgtccaaatttgttcatggagctcgctga
cgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAAGCACTGTCATTATGCTTTG 516 43 54 Antisense
GAGAAAACTTCTGGACTGTGCCCAA 649 391 106 Antisense
GACTGTGCCCAAAACTTGAAACCTG 154 375 119 Antisense
AACCTGTGTTTTCAATTGCCTTACT 19 147 138 Antisense
GTATTATCTTGTGTTGCAACTCGGT 330 453 178 Antisense
GCAACTCGGTGCAATGTTCACTGTT 432 319 193 Antisense
ATGGAGATTGCCCATCTTGCAAAAT 65 53 221 Antisense
TGATTTCTAGACGCATTTTTTCCAA 302 563 245 Antisense
GACGCATTTTTTCCAATATCTGCAA 264 381 254 Antisense
GCAACATTCAATGACAACTCAACCA 696 319 279 Antisense
TTTGTTCATGGAGCTCGCTGACGAC 229 667 333 Antisense
Sequence Source Affymetrix Proprietary Database