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[187356_s_at]

Description F56D1.2 /REP_DB=WormBase Gene ID /WP=CE01970 /TR=SW:Q10128 /GB=AAA81100.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 59      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 175.7
(0.3)
P 		178.9
(0.5)
P 		223.2
(3)
P 		116.2
(-3)
A 		107
B 154.2
(1.6)
P 		158.7
(2)
P 		170.1
(3)
P 		101.6
(-3)
A 		69
C 142.7
(-0.4)
P 		172.2
(3)
P 		170.3
(2.8)
P 		120
(-3)
A 		52
avr 157.5
(0.6) 		169.9
(1.6) 		187.9
(3) 		112.6
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 133.7
(3)
P 		130.3
(2.7)
M 		111.2
(1)
P 		73.3
(-2.5)
A 		67.8
(-3)
A 		80.6
(-1.8)
A 		66
B 179.4
(3)
P 		139
(1.1)
P 		72.8
(-2.1)
A 		59.8
(-2.7)
A 		69
(-2.3)
A 		53.8
(-3)
P 		126
C 144.6
(3)
A 		116.3
(1.4)
P 		108.5
(0.9)
P 		39.5
(-3)
A 		45.3
(-2.7)
A 		85.7
(-0.4)
A 		105
avr 152.6
(3) 		128.5
(1.5) 		97.5
(-0.5) 		57.5
(-3) 		60.7
(-2.8) 		73.4
(-2) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 64
(3)
P 		38.8
(-0.2)
P 		58.3
(2.3)
P 		17
(-3)
A 		47
B 49.2
(3)
P 		39.2
(0.8)
P 		39.4
(0.9)
P 		21.6
(-3)
A 		28
C 47.2
(1.1)
P 		49.5
(1.5)
P 		59.4
(3)
P 		20.2
(-3)
A 		39
avr 53.5
(3) 		42.5
(1.1) 		52.4
(2.8) 		19.6
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 24.6
(-1.7)
P 		46.3
(3)
M 		24.2
(-1.8)
P 		18.6
(-3)
A 		20.5
(-2.6)
A 		19.6
(-2.8)
A 		28
B 62.4
(3)
P 		46.3
(0.9)
P 		17.7
(-2.8)
A 		15.8
(-3)
A 		28
(-1.4)
A 		20.1
(-2.4)
P 		47
C 53.6
(3)
A 		35.5
(0.6)
P 		27.6
(-0.4)
P 		7.9
(-3)
A 		14.7
(-2.1)
A 		28.7
(-0.3)
A 		46
avr 46.9
(3) 		42.7
(2.2) 		23.2
(-1.3) 		14.1
(-3) 		21.1
(-1.7) 		22.8
(-1.4) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187356_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5345
Sequence Type Exemplar sequence
Representative Public ID F56D1.2 NCBI
Target Description F56D1.2 /REP_DB=WormBase Gene ID /WP=CE01970 /TR=SW:Q10128 /GB=AAA81100.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027035 NCBI Caenorhabditis elegans F56D1.2 (F56D1.2) mRNA, complete cds. 11/11 None
SNAP00000013101 ENSEMBL cdna:SNAP chromosome:CEL140:II:5475379:5478181:1 11/11 None
GENEFINDER00000013109 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5475379:5478457:1 11/11 None
F56D1.2 ENSEMBL cdna:known chromosome:CEL140:II:5475379:5478484:1 gene:F56D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5475376-5478179(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56D1.2
Entrez Gene 173932 Entrez gene
SwissProt Q10128 EMBL-EBI
WormBase CE01970 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81100 Hypothetical protein F56D1.2 [Caenorhabditis elegans] ref|NP_001022206.1| F56D1.2 [Caenorhabditis elegans] sp|Q10128|YSO2_CAEEL Hypothetical protein F56D1.2 in chromosome II precursor 0.0
blast CAE59113 Hypothetical protein CBG02408 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022206.1 1 375-397
F56D1.2 1 375-397
SNAP00000013101 1 375-397
GENEFINDER00000013109 3 10-32,373-395,722-741
Sequence
Target Sequence 
>C. ELEGANS:187356_S_AT
gcaacacacaattttccggaagctcgtaagaaatacgccgttgtcagattcaactattct
ccacatgttccaccaaacttagcgattcttaaccttcccaccttcattttacctgaacaa
ttcgcgcaactcactgcattcctgcacaatgtagagcacacagaaagagccaacgtcact
caaaacatatcagaagctcagattcatgagtggaacctttgtgctagtcgtatgatgtca
ttcttcgttcgaaatccgaattggctcgaaacgagatggaaaccgaaagacgagctcgca
gcgcttcacctcaaacgtcagtctcccgtcattgttccaatccaaactgaagaggatcgc
attgctgcttctataaagtataacctggtgcccccgcaagcactcgtggacagtgatgac
gaagatgatgttgatctccagccacacgcttctcatcagaaccagccactcattctccta
ccacctgaacagtgcggccctgactctgattctgactcggaatctgactccagttcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACACACAATTTTCCGGAAGCTC 136 319 1567 Antisense
GTCAGATTCAACTATTCTCCACATG 313 467 1609 Antisense
GTTCCACCAAACTTAGCGATTCTTA 237 441 1633 Antisense
TGAACAATTCGCGCAACTCACTGCA 370 573 1680 Antisense
AACTCACTGCATTCCTGCACAATGT 468 139 1694 Antisense
AGTGGAACCTTTGTGCTAGTCGTAT 252 57 1775 Antisense
TCCCGTCATTGTTCCAATCCAAACT 119 597 1890 Antisense
AGAGGATCGCATTGCTGCTTCTATA 315 67 1917 Antisense
AGATGATGTTGATCTCCAGCCACAC 694 67 1989 Antisense
CCTGACTCTGATTCTGACTCGGAAT 130 267 2065 Antisense
GACTCGGAATCTGACTCCAGTTCGG 617 373 2080 Antisense
Sequence Source Affymetrix Proprietary Database