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[187355_at]

Description C32D5.1 /REP_DB=WormBase Gene ID /WP=CE01839 /TR=SW:Q09262 /GB=AAC46789.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 07      4grp_high_8_8 > 20      6grp_highest_nonorm > 81      6grp_total > 62      4grp_total > 20      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 234.2
(1.8)
P 		223.7
(1.3)
P 		136.9
(-3)
P 		259.2
(3)
P 		122
B 186.4
(-1.7)
P 		248.2
(0.1)
P 		145
(-3)
P 		342.4
(3)
P 		197
C 233.5
(-1.1)
P 		246.6
(-0.5)
P 		190.6
(-3)
P 		325
(3)
P 		134
avr 218
(-0.6) 		239.5
(0.2) 		157.5
(-3) 		308.9
(3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 122.3
(-3)
P 		276.9
(0.6)
P 		383.3
(3)
P 		376.5
(2.8)
P 		275.4
(0.5)
P 		136.6
(-2.7)
P 		261
B 241.9
(-0.9)
P 		273.6
(-0.4)
P 		460.4
(3)
P 		281.5
(-0.2)
P 		252
(-0.7)
P 		126.3
(-3)
P 		334
C 226.5
(-0.2)
P 		283.7
(1.4)
P 		338.9
(3)
P 		333.9
(2.9)
P 		223
(-0.3)
P 		128.2
(-3)
P 		211
avr 196.9
(-1.5) 		278.1
(0.4) 		394.2
(3) 		330.6
(1.6) 		250.1
(-0.3) 		130.4
(-3) 		264
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 85.3
(3)
P 		48.6
(-1.4)
P 		35.8
(-3)
P 		37.9
(-2.7)
P 		50
B 59.4
(0.9)
P 		61.3
(1.2)
P 		33.6
(-3)
P 		73
(3)
P 		39
C 77.3
(3)
P 		70.9
(1.3)
P 		66.4
(0.1)
P 		54.8
(-3)
P 		23
avr 74
(3) 		60.3
(0.1) 		45.3
(-3) 		55.2
(-0.9) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 22.6
(-3)
P 		98.5
(3)
P 		83.5
(1.8)
P 		95.5
(2.8)
P 		83.1
(1.8)
P 		33.3
(-2.2)
P 		76
B 84.2
(0.4)
P 		91.1
(1.1)
P 		111.8
(3)
P 		74.6
(-0.4)
P 		102.4
(2.1)
P 		47.1
(-3)
P 		65
C 84
(2.6)
P 		86.6
(3)
P 		86.3
(3)
P 		67.1
(0.3)
P 		72.2
(1)
P 		42.9
(-3)
P 		44
avr 63.6
(-0.4) 		92.1
(2.8) 		93.9
(3) 		79.1
(1.3) 		85.9
(2.1) 		41.1
(-3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4881
Sequence Type Exemplar sequence
Representative Public ID C32D5.1 NCBI
Target Description C32D5.1 /REP_DB=WormBase Gene ID /WP=CE01839 /TR=SW:Q09262 /GB=AAC46789.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062875(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062875 NCBI Caenorhabditis elegans C32D5.1 (C32D5.1) mRNA, complete cds. 10/11 None
SNAP00000026831 ENSEMBL cdna:SNAP chromosome:CEL140:II:6344728:6345304:1 11/11 None
GENEFINDER00000026842 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6344728:6346348:1 10/11 None
C32D5.1 ENSEMBL cdna:known chromosome:CEL140:II:6344255:6345304:1 gene:C32D5.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6344366-6345301(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32D5.1
Entrez Gene 174049 Entrez gene
SwissProt Q09262 EMBL-EBI
WormBase CE34726 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46789 Hypothetical protein C32D5.1 [Caenorhabditis elegans] ref|NP_495276.2| C32D5.1 [Caenorhabditis elegans] sp|Q09262|YQD1_CAEEL Hypothetical protein C32D5.1 in chromosome II 1.0E-127
blast T15739 hypothetical protein C32D5.1 - Caenorhabditis elegans 1.0E-114
blast T15739 hypothetical protein C32D5.1 - Caenorhabditis elegans 3.0E-66
blast AAC46789 Hypothetical protein C32D5.1 [Caenorhabditis elegans] ref|NP_495276.2| C32D5.1 [Caenorhabditis elegans] sp|Q09262|YQD1_CAEEL Hypothetical protein C32D5.1 in chromosome II 4.0E-63
blast AAC46789 Hypothetical protein C32D5.1 [Caenorhabditis elegans] ref|NP_495276.2| C32D5.1 [Caenorhabditis elegans] sp|Q09262|YQD1_CAEEL Hypothetical protein C32D5.1 in chromosome II 1.0E-62
blast T15739 hypothetical protein C32D5.1 - Caenorhabditis elegans 4.0E-60
Sequence
Target Sequence 
>C. ELEGANS:187355_AT
aagtccaagtctatagttccgttctacgattgtctacaattccttattccttatttggaa
aaaacagacagcttgtcaaaattgacattaacgacttgcaatgcagaagccgatgatcaa
caagtaaaagcaaaaaagccaaagattgagcatgagctatcagaagacaagttgaatggt
ctgaactatgactggcttcaaaaagttatagatacggttacatgtcagcaatctacaagt
tgtacaagtatacaattgaattcttcggctccttcaacctgctctgcaaaaacacctaac
tcaacagcaaatctaccaacttctgaaaaacacgcagacatcatagcctatgtaacaaac
tttttagaagatgtgccaaacgacaagttgatgcttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCCAAGTCTATAGTTCCGTTCT 617 157 289 Antisense
GATTGTCTACAATTCCTTATTCCTT 104 435 316 Antisense
GCAATGCAGAAGCCGATGATCAACA 601 319 386 Antisense
TGGTCTGAACTATGACTGGCTTCAA 422 551 465 Antisense
ATACGGTTACATGTCAGCAATCTAC 379 21 500 Antisense
TACAATTGAATTCTTCGGCTCCTTC 205 641 539 Antisense
TCCTTCAACCTGCTCTGCAAAAACA 664 589 558 Antisense
GCTCTGCAAAAACACCTAACTCAAC 699 299 569 Antisense
CTCAACAGCAAATCTACCAACTTCT 346 227 588 Antisense
AAACACGCAGACATCATAGCCTATG 587 127 616 Antisense
GCCAAACGACAAGTTGATGCTTCAC 195 279 663 Antisense
Sequence Source Affymetrix Proprietary Database