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[187354_at]

Description C44B7.1 /REP_DB=WormBase Gene ID /WP=CE25810 /TR=SW:Q10920 /GB=AAC46754.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 55      6grp_total > 74      4grp_total > 09      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1745
1 2 3 4 range
A 1179.9
(-3)
P 		1189.9
(-3)
P 		1356.4
(-2.2)
P 		2450.3
(3)
P 		1270
B 1011.7
(-3)
P 		1375.9
(-1.1)
P 		1787.3
(1)
P 		2165.8
(3)
P 		1154
C 1201.6
(-3)
P 		1490.2
(-1.9)
P 		1191.5
(-3)
P 		2756.3
(3)
P 		1565
avr 1131.1
(-3) 		1352
(-2) 		1445.1
(-1.6) 		2457.5
(3) 		1326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 858
1 2 3 4 5 6 range
A 1325.6
(-2.1)
P 		1244.8
(-3)
P 		1742.9
(2.6)
P 		1777.1
(3)
P 		1477.7
(-0.4)
P 		1432.3
(-0.9)
P 		532
B 1041.7
(-3)
P 		1358.1
(-0.4)
P 		1680.7
(2.3)
P 		1425.4
(0.2)
P 		1764.2
(3)
P 		1619.9
(1.8)
P 		723
C 919.1
(-3)
P 		1300.9
(-0.3)
P 		1447.5
(0.8)
P 		1739.6
(2.9)
P 		1440.6
(0.7)
P 		1759.9
(3)
P 		841
avr 1095.5
(-3) 		1301.3
(-0.8) 		1623.7
(2.7) 		1647.4
(3) 		1560.8
(2.1) 		1604
(2.5) 		552
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 429.6
(3)
P 		258.3
(-3)
P 		354.6
(0.4)
P 		358.7
(0.5)
P 		171
B 322.6
(-3)
P 		339.8
(-2.3)
P 		414.2
(1)
P 		461.5
(3)
P 		139
C 397.8
(-3)
P 		428.5
(-0.2)
P 		415.3
(-1.4)
P 		464.7
(3)
P 		67
avr 383.3
(-0.1) 		342.2
(-3) 		394.7
(0.7) 		428.3
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 244.4
(-3)
P 		442.7
(2.8)
P 		379.6
(0.9)
P 		450.7
(3)
P 		445.9
(2.9)
P 		348.7
(0)
P 		206
B 362.5
(-3)
P 		452.1
(-1.5)
P 		408.1
(-2.2)
P 		377.5
(-2.7)
P 		716.8
(3)
P 		604.1
(1.1)
P 		354
C 340.7
(-3)
P 		397
(-1.6)
P 		368.4
(-2.3)
P 		349.8
(-2.8)
P 		466.2
(0)
P 		589.1
(3)
P 		248
avr 315.9
(-3) 		430.6
(0) 		385.4
(-1.2) 		392.7
(-1) 		543
(3) 		514
(2.2) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5152
Sequence Type Exemplar sequence
Representative Public ID C44B7.1 NCBI
Target Description C44B7.1 /REP_DB=WormBase Gene ID /WP=CE25810 /TR=SW:Q10920 /GB=AAC46754.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063012(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063012 NCBI Caenorhabditis elegans C44B7.1 (C44B7.1) mRNA, complete cds. 11/11 None
SNAP00000013952 ENSEMBL cdna:SNAP chromosome:CEL140:II:6902024:6902771:1 11/11 None
GENEFINDER00000013965 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6902024:6902771:1 11/11 None
C44B7.1.2 ENSEMBL cdna:known chromosome:CEL140:II:6901259:6902862:1 gene:C44B7.1 11/11 None
C44B7.1.3 ENSEMBL cdna:known chromosome:CEL140:II:6901259:6902771:1 gene:C44B7.1 11/11 None
C44B7.1.1 ENSEMBL cdna:known chromosome:CEL140:II:6901440:6902862:1 gene:C44B7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6902019-6902767(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B7.1
Entrez Gene 174129 Entrez gene
SwissProt Q10920 EMBL-EBI
WormBase CE25810 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602888_AT similar to 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome regulatory subunit p27) cfa
CANINE:1585328_AT similar to 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome regulatory subunit p27) cfa
CANINE_2:CFA.7881.1.A1_AT similar to 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome regulatory subunit p27) cfa
CANINE_2:CFA.8121.1.A1_S_AT similar to 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome regulatory subunit p27) cfa
CANINE_2:CFAAFFX.12851.1.S1_AT similar to 26S proteasome non-ATPase regulatory subunit 9 (26S proteasome regulatory subunit p27) cfa
DROSOPHILA_2:1629777_AT dm
DROSGENOME1:149853_AT dm
CHICKEN:GGAAFFX.12466.1.S1_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 gga
HG-U95AV2:1444_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
HC-G110:1444_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
HG-U133_PLUS_2:207805_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
HG-U133A:207805_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
HG-FOCUS:207805_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
HG-U133A_2:207805_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
HG-U133_PLUS_2:209334_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
HG-U133A:209334_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
HG-U133A_2:209334_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
HUGENEFL:AB003177_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
U133_X3P:G4506234_3P_A_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
U133_X3P:G12803158_3P_A_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
HG-U95AV2:36492_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
HG-U95C:66953_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 hs
MOUSE430_2:1447670_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 mm
MOE430B:1447670_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 mm
MG-U74AV2:97929_R_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 mm
MU11KSUBB:W77431_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 mm
MOE430A:1423387_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 mm
MOUSE430A_2:1423387_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 mm
MOUSE430_2:1423387_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 mm
MOE430A:1423386_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 mm
MOUSE430A_2:1423386_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 mm
MOUSE430_2:1423386_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 mm
MG-U74BV2:116095_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 (Psmd9), mRNA mm
MOUSE430_2:1444321_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 (Psmd9), mRNA mm
MOE430B:1444321_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 (Psmd9), mRNA mm
MU19KSUBA:TC23836_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 (Psmd9), mRNA mm
RG-U34C:RC_AI175576_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 rn
RAE230A:1368184_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 rn
RAT230_2:1368184_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 rn
YEAST_2:1777842_AT Protein with similarity to the p27 subunit of mammalian proteasome modulator; not essential; interacts with Rpn4p Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL16319 Hypothetical protein C44B7.1 [Caenorhabditis elegans] ref|NP_495413.1| C44B7.1 [Caenorhabditis elegans] sp|Q10920|PSD9_CAEEL Probable 26S proteasome non-ATPase regulatory subunit 1.0E-109
blast CAE65990 Hypothetical protein CBG11181 [Caenorhabditis briggsae] 6.0E-92
Sequence
Target Sequence 
>C. ELEGANS:187354_AT
acttcttcaacaacgcgacgaactcgatggaaaaattaaagaacttatgctagttctgga
gacgaataacagcactatggattcgccacttcttgatgcagaaggatatcccctgaatac
aattgatgtctatgctgttcgtcatgctaggcatgatctgatttgtctcagaaatgatcg
agcagcgttaacggagaaaattgttgttgaaatggaaaacgagaataaagaagtttcggg
acaaactgccacatccgaggaaaagccagttcacagaacttcgaatgaaccatttgtcaa
aatttcatctgtcgttgagttatcgcctgcggatattggaggtttcagaaaagacgattt
gattattcaatatggaaatcttcatcatggaaactttaacgatatgcaagaagttgcaca
gataactaagcaaagtgaagacaagatcattcgggtaactgtcattcgcgagaaccgccc
agttcgtcttgaaatttgcccaaaaaagtggtcgggtccaggacttcttggatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCTTCAACAACGCGACGAACTC 311 103 39 Antisense
ACAGCACTATGGATTCGCCACTTCT 361 107 107 Antisense
GGATTCGCCACTTCTTGATGCAGAA 350 509 117 Antisense
GTCTATGCTGTTCGTCATGCTAGGC 447 467 166 Antisense
GCTAGGCATGATCTGATTTGTCTCA 394 303 184 Antisense
GACAAACTGCCACATCCGAGGAAAA 35 367 278 Antisense
ATCTGTCGTTGAGTTATCGCCTGCG 142 35 345 Antisense
GATCATTCGGGTAACTGTCATTCGC 437 417 483 Antisense
TAACTGTCATTCGCGAGAACCGCCC 442 637 494 Antisense
GCCCAGTTCGTCTTGAAATTTGCCC 256 285 515 Antisense
GTCGGGTCCAGGACTTCTTGGATGC 248 473 549 Antisense
Sequence Source Affymetrix Proprietary Database