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[187351_at]

Description Y110A2AL.6 /REP_DB=WormBase Gene ID /WP=CE23222 /TR=Q9N4A3 /GB=AAF60399.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 21.4
(-3)
A 		25.4
(-2.2)
A 		50.7
(3)
A 		36
(-0)
A 		29
B 23.7
(-0.2)
A 		44.2
(3)
A 		17.2
(-1.2)
A 		5.3
(-3)
A 		39
C 15.6
(-1.5)
A 		9.2
(-3)
A 		14
(-1.9)
A 		35
(3)
A 		26
avr 20.2
(-3) 		26.3
(2.2) 		27.3
(3) 		25.4
(1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 15.1
(0.8)
A 		21.1
(3)
A 		5.8
(-2.7)
A 		7
(-2.3)
A 		10.8
(-0.9)
A 		5.1
(-3)
A 		16
B 3.7
(-3)
A 		5.7
(-1.5)
A 		9.9
(1.7)
A 		11.6
(3)
A 		8
(0.3)
A 		6.2
(-1.1)
A 		8
C 9.9
(-1.1)
A 		20.9
(3)
A 		4.7
(-3)
A 		12.7
(-0)
A 		5.5
(-2.7)
A 		12.2
(-0.2)
A 		16
avr 9.6
(-1.2) 		15.9
(3) 		6.8
(-3) 		10.4
(-0.6) 		8.1
(-2.1) 		7.8
(-2.3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7.8
(-1.1)
A 		5.5
(-2.9)
A 		13.3
(3)
A 		5.3
(-3)
A 		8
B 7.6
(1)
A 		10.9
(3)
A 		4
(-1.2)
A 		1.1
(-3)
A 		10
C 5.2
(1.7)
A 		2.6
(-3)
A 		4.9
(1.2)
A 		5.9
(3)
A 		3
avr 6.9
(2.1) 		6.3
(1) 		7.4
(3) 		4.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.8
(-1.5)
A 		7.5
(3)
A 		1.3
(-2.9)
A 		1.8
(-2.4)
A 		3.3
(-1)
A 		1.2
(-3)
A 		6
B 1.3
(-3)
A 		1.9
(-1.2)
A 		2.4
(0.3)
A 		3.1
(2.4)
A 		3.3
(3)
A 		2.3
(-0)
A 		2
C 3.7
(-0.1)
A 		6.4
(3)
A 		1.2
(-3)
A 		2.6
(-1.4)
A 		1.8
(-2.3)
A 		4.1
(0.3)
A 		5
avr 2.6
(-1.4) 		5.3
(3) 		1.6
(-3) 		2.5
(-1.5) 		2.8
(-1.1) 		2.5
(-1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4475
Sequence Type Exemplar sequence
Representative Public ID Y110A2AL.6 NCBI
Target Description Y110A2AL.6 /REP_DB=WormBase Gene ID /WP=CE23222 /TR=Q9N4A3 /GB=AAF60399.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061980 NCBI Caenorhabditis elegans Y110A2AL.6 (Y110A2AL.6) mRNA, complete cds. 11/11 None
SNAP00000036279 ENSEMBL cdna:SNAP chromosome:CEL140:II:2841051:2841628:-1 11/11 None
GENEFINDER00000036293 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2841051:2841628:-1 11/11 None
Y110A2AL.6 ENSEMBL cdna:known chromosome:CEL140:II:2841051:2841628:-1 gene:Y110A2AL.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2841049-2841627(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A2AL.6
Entrez Gene 190937 Entrez gene
SwissProt Q9N4A3 EMBL-EBI
WormBase CE36029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60399 Hypothetical protein Y110A2AL.6 [Caenorhabditis elegans] ref|NP_494381.2| Y110A2AL.6 [Caenorhabditis elegans] 7.0E-85
blast AAF60399 Hypothetical protein Y110A2AL.6 [Caenorhabditis elegans] ref|NP_494381.2| Y110A2AL.6 [Caenorhabditis elegans] 9.0E-81
blast AAO38587 Hypothetical protein Y110A2AL.4b [Caenorhabditis elegans] ref|NP_872032.1| Y110A2AL.4b [Caenorhabditis elegans] 5.0E-38
blast AAO38586 Hypothetical protein Y110A2AL.4a [Caenorhabditis elegans] ref|NP_494380.2| Y110A2AL.4a [Caenorhabditis elegans] 5.0E-38
Sequence
Target Sequence 
>C. ELEGANS:187351_AT
tgccaactccaatggtgaacccctaccaccggacatgaaggatctacaaaaccaccttga
caccttccagaaagccgttgacaccggagacaagaaggctctgcgcgagatgatgccggt
gaatcaaagaatttccgaggaaaagctagatgagttcatcaagactcgcaagtcgttcaa
gatgacagcaaaaagcgcacaggccacaagttctggaatcaccggaaaggtagactacgc
cataggaaaggctactcttctgctcgacagttcctctagtccatctgcctacaagtttgt
gagtatcagcaaacaatcaatcccttctcaacgtcgtgaaatccctgattgtttttacac
tctcctgataatgtgcccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCAACTCCAATGGTGAACCCCTA 124 587 48 Antisense
ACCCCTACCACCGGACATGAAGGAT 82 89 66 Antisense
GAAAGCCGTTGACACCGGAGACAAG 163 345 117 Antisense
CGGAGACAAGAAGGCTCTGCGCGAG 535 243 132 Antisense
CTCTGCGCGAGATGATGCCGGTGAA 625 231 146 Antisense
AAAGCGCACAGGCCACAAGTTCTGG 186 125 239 Antisense
ATAGGAAAGGCTACTCTTCTGCTCG 301 21 289 Antisense
TATCAGCAAACAATCAATCCCTTCT 418 659 351 Antisense
AATCCCTTCTCAACGTCGTGAAATC 695 167 366 Antisense
ATCCCTGATTGTTTTTACACTCTCC 144 39 388 Antisense
TACACTCTCCTGATAATGTGCCCGT 489 643 403 Antisense
Sequence Source Affymetrix Proprietary Database