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[187350_at]

Description F37A4.7 /REP_DB=WormBase Gene ID /WP=CE24954 /TR=SW:P41885 /GB=AAA50635.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 15      6grp_total > 15      4grp_total > 22      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 489.4
(3)
P 		181.9
(-2.3)
A 		140.9
(-3)
A 		464.7
(2.6)
P 		349
B 428.6
(3)
P 		212.7
(-1.5)
A 		142.2
(-3)
A 		413.3
(2.7)
P 		286
C 482.4
(3)
P 		107.2
(-3)
A 		154.5
(-2.2)
A 		385.5
(1.5)
P 		375
avr 466.8
(3) 		167.3
(-2.6) 		145.9
(-3) 		421.2
(2.1) 		321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 389.1
(2.4)
P 		414.2
(3)
P 		257.5
(-0.6)
P 		226
(-1.3)
P 		232.6
(-1.1)
M 		151.5
(-3)
A 		263
B 474.8
(2.6)
P 		492.2
(3)
P 		313.2
(-1)
M 		235.8
(-2.7)
P 		265.2
(-2.1)
P 		222.7
(-3)
P 		270
C 514.6
(3)
P 		390.2
(1)
P 		226
(-1.7)
P 		236.3
(-1.5)
P 		223.9
(-1.7)
P 		144.2
(-3)
P 		370
avr 459.5
(3) 		432.2
(2.4) 		265.6
(-1.1) 		232.7
(-1.7) 		240.6
(-1.6) 		172.8
(-3) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 178.2
(3)
P 		39.5
(-2.9)
A 		36.8
(-3)
A 		68
(-1.7)
P 		141
B 136.7
(3)
P 		52.5
(-1.9)
A 		32.9
(-3)
A 		88.1
(0.2)
P 		104
C 159.7
(3)
P 		30.8
(-3)
A 		53.8
(-1.9)
A 		65
(-1.4)
P 		129
avr 158.2
(3) 		40.9
(-3) 		41.2
(-3) 		73.7
(-1.3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 71.7
(-1.1)
P 		147.3
(3)
P 		56.1
(-2)
P 		57.3
(-1.9)
P 		70.2
(-1.2)
M 		36.9
(-3)
A 		110
B 165.2
(3)
P 		163.8
(2.9)
P 		76.1
(-2.2)
M 		62.4
(-3)
P 		107.7
(-0.4)
P 		83.1
(-1.8)
P 		103
C 190.7
(3)
P 		119.1
(0)
P 		57.5
(-2.6)
P 		47.5
(-3)
P 		72.4
(-2)
P 		48.3
(-3)
P 		143
avr 142.5
(2.9) 		143.4
(3) 		63.2
(-2.5) 		55.7
(-3) 		83.4
(-1.1) 		56.1
(-3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187350_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6523
Sequence Type Exemplar sequence
Representative Public ID F37A4.7 NCBI
Target Description F37A4.7 /REP_DB=WormBase Gene ID /WP=CE24954 /TR=SW:P41885 /GB=AAA50635.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027397(11), NM_001027396(11), NM_066066(11), NM_001027395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027397 NCBI Caenorhabditis elegans RaBPHilin family member (rbf-1) (rbf-1) mRNA, complete cds. 11/11 None
NM_001027396 NCBI Caenorhabditis elegans RaBPHilin family member (rbf-1) (rbf-1) mRNA, complete cds. 11/11 None
NM_066066 NCBI Caenorhabditis elegans RaBPHilin family member (rbf-1) (rbf-1) mRNA, complete cds. 11/11 None
NM_001027395 NCBI Caenorhabditis elegans RaBPHilin family member (rbf-1) (rbf-1) mRNA, complete cds. 11/11 None
SNAP00000044166 ENSEMBL cdna:SNAP chromosome:CEL140:III:6696691:6703715:1 11/11 None
GENEFINDER00000044178 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6696691:6703715:1 11/11 None
F37A4.7d ENSEMBL cdna:known chromosome:CEL140:III:6675736:6703909:1 gene:F37A4.7 11/11 None
F37A4.7c ENSEMBL cdna:known chromosome:CEL140:III:6690942:6703715:1 gene:F37A4.7 11/11 None
F37A4.7a ENSEMBL cdna:known chromosome:CEL140:III:6691851:6703715:1 gene:F37A4.7 11/11 None
F37A4.7b ENSEMBL cdna:known chromosome:CEL140:III:6695604:6703715:1 gene:F37A4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6695602-6703714(+) 100.0 100.0
Public Domain and Genome References
Ensembl F37A4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM48523 Rabphilin protein 1, isoform d [Caenorhabditis elegans] ref|NP_001022568.1| RaBPHilin family member (rbf-1) [Caenorhabditis elegans] sp|P41885|RBF1_CAEEL Rabphilin-1 0.0
blast AAL32218 Rabphilin protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022567.1| RaBPHilin family member (rbf-1) [Caenorhabditis elegans] 0.0
blast AAL32217 Rabphilin protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022566.1| RaBPHilin family member (rbf-1) [Caenorhabditis elegans] 0.0
blast AAL32216 Rabphilin protein 1, isoform a [Caenorhabditis elegans] ref|NP_498467.3| RaBPHilin family member (rbf-1) [Caenorhabditis elegans] gb|AAK84870.1| rabphilin [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 6.4E-34
Pfam IPR000008 EMBL-EBI C2 domain 4.2E-33
Pfam IPR003315 EMBL-EBI Rabphilin-3A effector 1.0E-126
Pfam IPR000008 EMBL-EBI C2 domain 6.4E-34
Pfam IPR000008 EMBL-EBI C2 domain 4.2E-33
Pfam IPR003315 EMBL-EBI Rabphilin-3A effector 1.0E-126
Pfam IPR000008 EMBL-EBI C2 domain 6.4E-34
Pfam IPR000008 EMBL-EBI C2 domain 4.2E-33
Pfam IPR003315 EMBL-EBI Rabphilin-3A effector 1.0E-126
Pfam IPR000008 EMBL-EBI C2 domain 6.4E-34
Pfam IPR000008 EMBL-EBI C2 domain 4.2E-33
Pfam IPR003315 EMBL-EBI Rabphilin-3A effector 1.0E-126
Pfam IPR000008 EMBL-EBI C2 domain 6.4E-34
Pfam IPR000008 EMBL-EBI C2 domain 4.2E-33
Pfam IPR003315 EMBL-EBI Rabphilin-3A effector 1.0E-126
Pfam IPR000008 EMBL-EBI C2 domain 6.4E-34
Pfam IPR000008 EMBL-EBI C2 domain 4.2E-33
Sequence
Target Sequence 
>C. ELEGANS:187350_AT
atgggatcaccgaggacgacaaggagaagaaaattctccgcgtaaccgtactcgatcgtg
accgtattggatccgactttcttggtgagacccgaattgcgctcaagaagctcaatgata
acgaaatgaaaaagttcaatctatacctggaaagtgcgcttccagtccctcaacaaacga
aggaagaggaaaatgaagatcgtggaaagattaatgttggattacaatataatattcaac
aaggatctctcttcatcaacatcaaccgatgtgtcgaactggttggaatggattctacag
gattctccgatccttattgcaaggtttcattgacaccgatcacatcaaaagcgcatcggg
cgaaaacgtcgacgaaaaagcgaactttgaatccagaatggaatgagcaacttcaattcg
tggttccattcaaagatcttccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGATCACCGAGGACGACAAGGA 174 51 2603 Antisense
GTGACCGTATTGGATCCGACTTTCT 490 479 2660 Antisense
TCCGACTTTCTTGGTGAGACCCGAA 550 593 2674 Antisense
GAGACCCGAATTGCGCTCAAGAAGC 522 391 2689 Antisense
GCTTCCAGTCCCTCAACAAACGAAG 316 305 2760 Antisense
ATCTCTCTTCATCAACATCAACCGA 31 33 2847 Antisense
GGATTCTCCGATCCTTATTGCAAGG 364 509 2902 Antisense
GCAAGGTTTCATTGACACCGATCAC 431 321 2921 Antisense
GCGCATCGGGCGAAAACGTCGACGA 706 287 2953 Antisense
GAGCAACTTCAATTCGTGGTTCCAT 123 391 3007 Antisense
GTGGTTCCATTCAAAGATCTTCCGA 379 489 3022 Antisense
Sequence Source Affymetrix Proprietary Database