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[187349_at]

Description B0495.6 /REP_DB=WormBase Gene ID /WP=CE01764 /TR=SW:Q09215 /GB=AAA62525.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 95      6grp_total > 77      4grp_total > 48      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 516
1 2 3 4 range
A 542.6
(-3)
P 		643.5
(-1.5)
P 		937.9
(3)
P 		571
(-2.6)
P 		395
B 471.1
(-3)
P 		836.1
(1.6)
P 		950.8
(3)
P 		648.2
(-0.8)
P 		480
C 563
(-2.7)
P 		804.1
(0.6)
P 		986.6
(3)
P 		537.6
(-3)
P 		449
avr 525.6
(-3) 		761.2
(0.3) 		958.4
(3) 		585.6
(-2.2) 		433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 943
1 2 3 4 5 6 range
A 371.6
(-3)
P 		564
(-1.1)
P 		740
(0.6)
P 		554.4
(-1.2)
P 		654.4
(-0.2)
P 		978.1
(3)
P 		607
B 713.8
(-2.1)
P 		621.7
(-3)
P 		746.4
(-1.7)
P 		690.3
(-2.3)
P 		836.2
(-0.8)
P 		1207.9
(3)
P 		586
C 653.5
(-2.5)
P 		588.4
(-3)
P 		593
(-3)
P 		649.6
(-2.5)
P 		750.1
(-1.7)
P 		1314.6
(3)
P 		726
avr 579.6
(-3) 		591.4
(-2.9) 		693.1
(-1.8) 		631.4
(-2.5) 		746.9
(-1.3) 		1166.9
(3) 		587
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 197.6
(1.2)
P 		139.7
(-0.9)
P 		245.2
(3)
P 		83.6
(-3)
P 		162
B 150.2
(-2.1)
P 		206.5
(2)
P 		220.3
(3)
P 		138.1
(-3)
P 		82
C 186.4
(-0.7)
P 		231.2
(0.3)
P 		343.9
(3)
P 		90.7
(-3)
P 		253
avr 178.1
(-0.3) 		192.5
(0.2) 		269.8
(3) 		104.1
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 68.5
(-3)
P 		200.6
(1.7)
P 		161.2
(0.3)
P 		140.6
(-0.4)
P 		197.5
(1.6)
P 		238.1
(3)
P 		170
B 248.4
(-1.5)
P 		206.9
(-2.4)
P 		181.2
(-3)
P 		182.8
(-3)
P 		339.7
(0.5)
P 		450.4
(3)
P 		269
C 242.2
(-0.8)
P 		179.5
(-2.1)
P 		150.9
(-2.6)
P 		130.6
(-3)
P 		242.7
(-0.8)
P 		440.1
(3)
P 		310
avr 186.4
(-2.1) 		195.7
(-1.8) 		164.4
(-2.7) 		151.3
(-3) 		260
(-0.1) 		376.2
(3) 		225
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4438
Sequence Type Exemplar sequence
Representative Public ID B0495.6 NCBI
Target Description B0495.6 /REP_DB=WormBase Gene ID /WP=CE01764 /TR=SW:Q09215 /GB=AAA62525.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063215(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063215 NCBI Caenorhabditis elegans B0495.6 (B0495.6) mRNA, complete cds. 11/11 None
GENEFINDER00000031542 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7698591:7698948:-1 11/11 None
B0495.6 ENSEMBL cdna:known chromosome:CEL140:II:7698591:7698948:-1 gene:B0495.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7698587-7698945(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0495.6
Entrez Gene 182004 Entrez gene
SwissProt Q09215 EMBL-EBI
WormBase CE01764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62525 Hypothetical protein B0495.6 [Caenorhabditis elegans] ref|NP_495616.1| B0495.6 [Caenorhabditis elegans] sp|Q09215|YP66_CAEEL Hypothetical protein B0495.6 in chromosome II 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR009846 EMBL-EBI Splicing factor 3B subunit 10 2.4E-6
Sequence
Target Sequence 
>C. ELEGANS:187349_AT
cgattccacgttcttgctcaattggagcatcttcaatcgaaatacaccggtacggccatg
cgacatgaaccgtcacgaatggattgtgaatcagcaccgcgacactcgcgcctttcaaat
gtctcatcccggaatgaacacgtatattgccgttgtggagaacgagagccgagctcgaac
ccgcttcaatctgataaatcgcatgattcagccgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTCCACGTTCTTGCTCAATTGG 648 245 31 Antisense
GGAGCATCTTCAATCGAAATACACC 234 521 54 Antisense
GAAATACACCGGTACGGCCATGCGA 422 359 69 Antisense
CCATGCGACATGAACCGTCACGAAT 670 269 86 Antisense
GATTGTGAATCAGCACCGCGACACT 694 433 112 Antisense
CTTTCAAATGTCTCATCCCGGAATG 63 223 142 Antisense
ATGTCTCATCCCGGAATGAACACGT 657 47 149 Antisense
ATGAACACGTATATTGCCGTTGTGG 700 43 164 Antisense
GTTGTGGAGAACGAGAGCCGAGCTC 395 437 182 Antisense
CTCGAACCCGCTTCAATCTGATAAA 526 233 204 Antisense
TGATAAATCGCATGATTCAGCCGTG 233 563 222 Antisense
Sequence Source Affymetrix Proprietary Database