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[187348_at]

Description C16C10.2 /REP_DB=WormBase Gene ID /WP=CE01493 /TR=SW:Q09462 /GB=CAA86740.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 30      4grp_high_8_8 > 07      6grp_highest_nonorm > 82      6grp_total > 88      4grp_total > 01      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 677
1 2 3 4 range
A 427.3
(-1.5)
P 		324.4
(-3)
P 		390.7
(-2.1)
P 		748.8
(3)
P 		424
B 403.8
(-2.6)
P 		358.3
(-3)
P 		492.7
(-1.7)
P 		1001.3
(3)
P 		643
C 552.6
(-0.4)
P 		392.7
(-3)
P 		515.7
(-1)
P 		767.6
(3)
P 		375
avr 461.2
(-1.7) 		358.5
(-3) 		466.4
(-1.7) 		839.2
(3) 		481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 378
1 2 3 4 5 6 range
A 211.8
(-3)
P 		342.8
(-0.2)
P 		423
(1.6)
P 		358.2
(0.2)
P 		334.1
(-0.4)
P 		489.1
(3)
P 		277
B 399.9
(-0.7)
P 		339.8
(-1.9)
P 		470.4
(0.7)
P 		281.6
(-3)
P 		510.4
(1.5)
P 		589.4
(3)
P 		308
C 351.9
(-1)
P 		290.6
(-2.1)
P 		239.1
(-3)
P 		263.9
(-2.6)
P 		496.3
(1.5)
P 		583.6
(3)
P 		345
avr 321.2
(-2.5) 		324.4
(-2.4) 		377.5
(-1.2) 		301.2
(-3) 		446.9
(0.5) 		554
(3) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 155.6
(3)
P 		70.4
(-3)
P 		102.1
(-0.8)
P 		109.6
(-0.2)
P 		85
B 128.8
(-1.1)
P 		88.5
(-3)
P 		114.2
(-1.8)
P 		213.4
(3)
P 		125
C 182.9
(3)
P 		112.9
(-3)
P 		179.7
(2.7)
P 		129.4
(-1.6)
P 		70
avr 155.8
(3) 		90.6
(-3) 		132
(0.8) 		150.8
(2.5) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 39
(-3)
P 		121.9
(3)
P 		92.1
(0.8)
P 		90.8
(0.7)
P 		100.8
(1.5)
P 		119.1
(2.8)
P 		83
B 139.1
(-0.3)
P 		113.1
(-1.4)
P 		114.2
(-1.4)
P 		74.6
(-3)
P 		207.4
(2.5)
P 		219.8
(3)
P 		145
C 130.4
(0.3)
P 		88.7
(-1.5)
P 		60.9
(-2.7)
P 		53.1
(-3)
P 		160.6
(1.5)
P 		195.4
(3)
P 		142
avr 102.8
(-1.3) 		107.9
(-1) 		89.1
(-2.1) 		72.8
(-3) 		156.3
(1.8) 		178.1
(3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6522
Sequence Type Exemplar sequence
Representative Public ID C16C10.2 NCBI
Target Description C16C10.2 /REP_DB=WormBase Gene ID /WP=CE01493 /TR=SW:Q09462 /GB=CAA86740.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065434 NCBI Caenorhabditis elegans C16C10.2 (C16C10.2) mRNA, complete cds. 11/11 A 
SNAP00000043777 ENSEMBL cdna:SNAP chromosome:CEL140:III:4177637:4178629:-1 11/11 None
GENEFINDER00000043792 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4177637:4178629:-1 11/11 None
C16C10.2.2 ENSEMBL cdna:known chromosome:CEL140:III:4177599:4178637:-1 gene:C16C10.2 11/11 None
C16C10.2.1 ENSEMBL cdna:known chromosome:CEL140:III:4177599:4178635:-1 gene:C16C10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4177636-4178629(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C10.2
Entrez Gene 175536 Entrez gene
SwissProt Q09462 EMBL-EBI
WormBase CE01493 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251371_AT expressed protein at
CANINE_2:CFA.21144.1.S1_S_AT similar to Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) cfa
CANINE_2:CFAAFFX.5747.1.S1_AT similar to Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) cfa
DROSOPHILA_2:1633091_AT dm
DROSGENOME1:154236_AT dm
CHICKEN:GGA.5254.1.S1_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) gga
HG-U133_PLUS_2:218235_S_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U133A:218235_S_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U133A_2:218235_S_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HU35KSUBA:N35449_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HU35KSUBA:AA314256_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HU35KSUBD:RC_AA279763_S_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
U133_X3P:G7705808_3P_A_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U95B:48489_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U133_PLUS_2:233760_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U133B:233760_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
HG-U95E:87744_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) hs
MG-U74BV2:114671_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOE430A:1453162_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOUSE430A_2:1453162_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOUSE430_2:1453162_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOE430A:1429485_A_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOUSE430A_2:1429485_A_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOUSE430_2:1429485_A_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOE430B:1459944_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MOUSE430_2:1459944_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) mm
MU19KSUBA:TC22481_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) (Utp11l), mRNA mm
MU19KSUBA:TC22481_G_AT UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) (Utp11l), mRNA mm
RAE230B:1395013_AT similar to CGI-94 protein rn
RAT230_2:1395013_AT similar to CGI-94 protein rn
YEAST_2:1774503_AT Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6364 rRNA processing inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30529 ribonucleoprotein complex inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86740 Hypothetical protein C16C10.2 [Caenorhabditis elegans] ref|NP_497835.1| C16C10.2 [Caenorhabditis elegans] sp|Q09462|UTP11_CAEEL Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) 1.0E-137
blast CAE72858 Hypothetical protein CBG20157 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR007144 EMBL-EBI Utp11 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187348_AT
gaatcaggacgaataccatcatcatatggttaacagtgaaacttgggctgacggtcgtca
tttcgataagaaaactgaagcagaagagactgaaacgcaaattcagaaaaagttgggaag
cttgaaagatttggaatatgtcaagttcaagctgaatgaggaaaagaagaaaatcgacga
aatgaaaggagaacttcactttgcggattcttcgttgaacggcaaaggaaatactcatac
cgtttttgtggacacagattcggaagccaaaagtttcgatccacgcgtctactttgacac
aaccacttcgatgctctctcgacaattcaatcgattgaaaaatgaagattttcaaaataa
aactattattggagctggtacgaaagaacaagtcagaaaagccgatcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAGGACGAATACCATCATCAT 261 327 198 Antisense
TGAAACTTGGGCTGACGGTCGTCAT 657 569 234 Antisense
GCTGACGGTCGTCATTTCGATAAGA 47 293 244 Antisense
AAGGAGAACTTCACTTTGCGGATTC 545 159 383 Antisense
CTTTGCGGATTCTTCGTTGAACGGC 533 223 396 Antisense
ATACTCATACCGTTTTTGTGGACAC 394 23 428 Antisense
TTGTGGACACAGATTCGGAAGCCAA 174 709 443 Antisense
AGCCAAAAGTTTCGATCCACGCGTC 213 83 462 Antisense
GCGTCTACTTTGACACAACCACTTC 536 291 482 Antisense
CTTCGATGCTCTCTCGACAATTCAA 39 221 503 Antisense
GAACAAGTCAGAAAAGCCGATCGTG 700 351 583 Antisense
Sequence Source Affymetrix Proprietary Database