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[187346_at]

Description C16C10.3 /REP_DB=WormBase Gene ID /WP=CE01494 /TR=SW:Q09249 /GB=CAA86741.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 11.1
(-3)
A 		49.5
(-1.3)
A 		82
(0.2)
A 		143.4
(3)
A 		132
B 33.2
(-1.5)
A 		5.1
(-3)
A 		60.2
(-0.1)
A 		119.5
(3)
P 		114
C 18.5
(-3)
A 		70.9
(1.7)
A 		39.5
(-1.1)
A 		86
(3)
P 		68
avr 20.9
(-3) 		41.8
(-1.7) 		60.6
(-0.5) 		116.3
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 671
1 2 3 4 5 6 range
A 2.8
(-3)
A 		4.8
(-3)
A 		12.5
(-2.9)
A 		37.2
(-2.7)
A 		289.4
(-0.4)
P 		673.4
(3)
P 		671
B 2.4
(-3)
A 		19.9
(-2.8)
A 		6
(-3)
A 		42.6
(-2.6)
A 		193.6
(-1)
P 		570.1
(3)
P 		568
C 50
(-2.6)
A 		14.3
(-3)
A 		19
(-2.9)
A 		71.8
(-2.4)
A 		337.7
(0.6)
P 		554.9
(3)
P 		541
avr 18.4
(-2.9) 		13
(-3) 		12.5
(-3) 		50.5
(-2.6) 		273.6
(-0.3) 		599.5
(3) 		587
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 4
(-3)
A 		10.8
(-0.7)
A 		21.4
(3)
A 		21
(2.9)
A 		17
B 10.6
(-0.7)
A 		1.3
(-3)
A 		14
(0.1)
A 		25.5
(3)
P 		24
C 6.1
(-3)
A 		20.4
(3)
A 		13.8
(0.2)
A 		14.5
(0.5)
P 		14
avr 6.9
(-3) 		10.8
(-1.3) 		16.4
(1.3) 		20.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.7
(-3)
A 		2.7
(-2.9)
A 		9.4
(-2.7)
A 		87.3
(0.2)
P 		163.9
(3)
P 		163
B 0.8
(-3)
A 		6.6
(-2.8)
A 		1.5
(-3)
A 		11.3
(-2.7)
A 		78.7
(-0.8)
P 		212.6
(3)
P 		212
C 18.5
(-2.5)
A 		4.4
(-3)
A 		4.8
(-3)
A 		14.4
(-2.7)
A 		109.3
(0.5)
P 		185.8
(3)
P 		181
avr 6.6
(-2.9) 		4.2
(-3) 		3
(-3) 		11.7
(-2.7) 		91.8
(-0.1) 		187.4
(3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187346_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6416
Sequence Type Exemplar sequence
Representative Public ID C16C10.3 NCBI
Target Description C16C10.3 /REP_DB=WormBase Gene ID /WP=CE01494 /TR=SW:Q09249 /GB=CAA86741.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065433 NCBI Caenorhabditis elegans C16C10.3 (C16C10.3) mRNA, complete cds. 11/11 None
SNAP00000043775 ENSEMBL cdna:SNAP chromosome:CEL140:III:4172740:4176124:-1 11/11 None
GENEFINDER00000043785 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4172740:4176124:-1 11/11 None
C16C10.3 ENSEMBL cdna:known chromosome:CEL140:III:4172305:4176130:-1 gene:C16C10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4172739-4176124(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C10.3
Entrez Gene 175535 Entrez gene
SwissProt Q09249 EMBL-EBI
WormBase CE01494 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86741 Hypothetical protein C16C10.3 [Caenorhabditis elegans] ref|NP_497834.1| C16C10.3 [Caenorhabditis elegans] sp|Q09249|YQ53_CAEEL Hypothetical protein C16C10.3 in chromosome III 0.0
blast NP_497754 C14B1.7 [Caenorhabditis elegans] 0.0
blast CAE58274 Hypothetical protein CBG01380 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 5.1E-54
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187346_AT
gacaagattcagcccggataccgtccacatctcgtggtgatcatcgcacaaagagcttca
catgctcgcgtttttccatcatgtatcagtggcaacagagcgacggatcagaacatccca
tctggaacatgtgtcgagaatgtcctgacatcctacggatacgacgagttcattttgtct
tcacagacgccgcttattggtaccgttcgtccgtgcaagtacacgatccttgtcaatgat
gccaaatggtctaaaaacgagctcatgcacttgacgtacttccgcgcattcggtcatcaa
gtgtcctaccagccaccatcggttccagatgttctttatgcggcagaaaatctggctaaa
cgaggacgcaacaattacaaaattcatcagcgttacgtgaatttgcaagcagttgagaac
cgcatcatcaaagaccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAGATTCAGCCCGGATACCGTC 316 365 2563 Antisense
ATACCGTCCACATCTCGTGGTGATC 156 23 2580 Antisense
ACATGCTCGCGTTTTTCCATCATGT 442 107 2622 Antisense
GCGACGGATCAGAACATCCCATCTG 705 287 2662 Antisense
GAATGTCCTGACATCCTACGGATAC 339 331 2700 Antisense
ACGAGTTCATTTTGTCTTCACAGAC 685 93 2726 Antisense
TTCACAGACGCCGCTTATTGGTACC 546 681 2742 Antisense
GTACACGATCCTTGTCAATGATGCC 371 461 2781 Antisense
AAACGAGCTCATGCACTTGACGTAC 710 125 2817 Antisense
GCGCATTCGGTCATCAAGTGTCCTA 345 279 2846 Antisense
GAGAACCGCATCATCAAAGACCATT 15 393 2977 Antisense
Sequence Source Affymetrix Proprietary Database