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[187344_at]

Description T16H12.8 /REP_DB=WormBase Gene ID /WP=CE00329 /TR=SW:P34571 /GB=CAA83134.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 11      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 37.8
(-1.2)
A 		31.3
(-1.6)
A 		7.2
(-3)
A 		107.6
(3)
P 		100
B 26.9
(-3)
A 		46.2
(-0.6)
P 		44.2
(-0.9)
A 		75.9
(3)
P 		49
C 50.3
(-0.3)
A 		37.1
(-1.7)
A 		24.5
(-3)
A 		81
(3)
P 		57
avr 38.3
(-1.8) 		38.2
(-1.8) 		25.3
(-3) 		88.2
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 6.1
(-2.4)
A 		3.2
(-3)
A 		30.1
(3)
A 		4.4
(-2.7)
A 		14.3
(-0.5)
A 		26.3
(2.2)
A 		27
B 5.7
(-3)
A 		9
(-2.3)
A 		19.6
(-0.2)
A 		35.4
(3)
A 		16.2
(-0.9)
A 		23.1
(0.5)
A 		30
C 6.8
(-2.5)
A 		45.8
(3)
A 		17.8
(-1)
A 		43
(2.6)
A 		3.3
(-3)
A 		27
(0.3)
A 		43
avr 6.2
(-3) 		19.3
(0.7) 		22.5
(1.6) 		27.6
(3) 		11.3
(-1.6) 		25.5
(2.4) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 13.8
(2.1)
A 		6.8
(-0.9)
A 		1.9
(-3)
A 		15.8
(3)
P 		14
B 8.6
(-3)
A 		11.4
(-0.8)
P 		10.2
(-1.7)
A 		16.2
(3)
P 		8
C 16.6
(3)
A 		10.7
(-1.4)
A 		8.6
(-3)
A 		13.7
(0.8)
P 		8
avr 13
(1.4) 		9.6
(-1) 		6.9
(-3) 		15.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.1
(-3)
A 		6.6
(3)
A 		1.1
(-3)
A 		4.3
(0.5)
A 		6.4
(2.8)
A 		6
B 2
(-3)
A 		3
(-2.2)
A 		4.8
(-0.7)
A 		9.4
(3)
A 		6.6
(0.7)
A 		8.6
(2.4)
A 		7
C 2.5
(-2.3)
A 		14
(3)
A 		4.5
(-1.4)
A 		8.6
(0.5)
A 		1.1
(-3)
A 		9
(0.7)
A 		13
avr 1.9
(-3) 		6
(1) 		5.3
(0.3) 		6.4
(1.4) 		4
(-0.9) 		8
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6082
Sequence Type Exemplar sequence
Representative Public ID T16H12.8 NCBI
Target Description T16H12.8 /REP_DB=WormBase Gene ID /WP=CE00329 /TR=SW:P34571 /GB=CAA83134.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066842(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066842 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-55) (srt-55) mRNA, complete cds. 11/11 None
GENEFINDER00000013083 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10104729:10106378:-1 11/11 None
T16H12.8 ENSEMBL cdna:known chromosome:CEL140:III:10104729:10106378:-1 gene:T16H12.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013073 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10104724-10106374(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srt-55
Ensembl T16H12.8
Entrez Gene 188561 Entrez gene
SwissProt P34571 EMBL-EBI
WormBase CE00329 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83134 Hypothetical protein T16H12.8 [Caenorhabditis elegans] ref|NP_499243.1| Serpentine Receptor, class T family member (srt-55) [Caenorhabditis elegans] sp|P34571|SRT55_CAEEL Serpentine receptor class T-55 precursor (Protein srt-55) 0.0
blast AAC69349 Serpentine receptor, class t protein 56 [Caenorhabditis elegans] ref|NP_503856.1| Serpentine Receptor, class T family member (srt-56) [Caenorhabditis elegans] 1.0E-118
blast CAE65042 Hypothetical protein CBG09883 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.3E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499243.1 8 7-29,70-92,105-127,142-164,185-207,234-256,277-299,309-326
T16H12.8 8 7-29,70-92,105-127,142-164,185-207,234-256,277-299,309-326
GENEFINDER00000013083 8 7-29,70-92,105-127,142-164,185-207,234-256,277-299,309-326
Sequence
Target Sequence 
>C. ELEGANS:187344_AT
gttcttcgtctgctgcatttttagggtttcaccgactttgtgatatgattcagaaattgg
aatggctggtaaataccaatacaaaaacaggactctggttgacagttctattcttttatg
cttgctacggttcaattttctttgacacagttctcttcaattcggactatatggctccgc
tgcttgacccaatgattggaaaacaagggattatatattccaacaattttctatatttcc
ataatataattgtcgcaaccacgttgattctagtctatgcatgtttgtgtacactttgga
gctctcgtgagatgaatacttcctcgttacacgtatccaagtttcagagaagtatacttc
ttcaatcaatttgtatttcattaacatatgcaataccagcaatttcgtttgttacaatgt
tcgtcctcccaattccgaaatggtttttccatgtttcagatattacttatcagctaagtg
gaggtcttcccttcataatgtacatctgcttgaataagagagttcgagaagaatttttgc
atttgctcagagtttgccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTCGTCTGCTGCATTTTTAGG 506 443 476 Antisense
ACAGTTCTATTCTTTTATGCTTGCT 559 107 577 Antisense
ATGCTTGCTACGGTTCAATTTTCTT 44 43 593 Antisense
GACACAGTTCTCTTCAATTCGGACT 343 367 619 Antisense
ATTCGGACTATATGGCTCCGCTGCT 273 9 635 Antisense
GCAACCACGTTGATTCTAGTCTATG 633 319 730 Antisense
GTTTGTGTACACTTTGGAGCTCTCG 286 451 758 Antisense
GAATACTTCCTCGTTACACGTATCC 183 325 789 Antisense
TCGTTTGTTACAATGTTCGTCCTCC 189 605 880 Antisense
GCTAAGTGGAGGTCTTCCCTTCATA 681 301 948 Antisense
TTGCATTTGCTCAGAGTTTGCCGGA 106 703 1012 Antisense
Sequence Source Affymetrix Proprietary Database