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[187343_at]

Description C01C4.2 /REP_DB=WormBase Gene ID /WP=CE03888 /TR=SW:Q11089 /GB=AAA82348.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 07      6grp_total > 50      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 39.6
(-1.7)
A 		24.8
(-3)
A 		63.4
(0.5)
P 		90.8
(3)
M 		66
B 30.4
(-3)
P 		55.7
(3)
A 		50.1
(1.7)
P 		45.5
(0.6)
A 		25
C 51.7
(-1.1)
P 		35
(-2.7)
P 		32.1
(-3)
P 		93.1
(3)
P 		61
avr 40.6
(-2.7) 		38.5
(-3) 		48.5
(-1.4) 		76.5
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 59.2
(3)
A 		20.9
(-1.5)
A 		39.9
(0.8)
P 		31.4
(-0.2)
A 		51.8
(2.1)
A 		7.7
(-3)
A 		52
B 42.2
(-1)
P 		62.3
(1.6)
P 		73.2
(3)
P 		54.5
(0.6)
P 		26.7
(-3)
P 		32.2
(-2.3)
A 		47
C 47.5
(-1.8)
P 		82.4
(0.9)
P 		47.7
(-1.8)
A 		109.9
(3)
P 		32.5
(-3)
A 		38.9
(-2.5)
A 		77
avr 49.6
(0.6) 		55.2
(1.4) 		53.6
(1.2) 		65.3
(3) 		37
(-1.4) 		26.3
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 14.4
(1.8)
A 		5.4
(-3)
A 		16.6
(3)
P 		13.3
(1.2)
M 		11
B 9.7
(-3)
P 		13.8
(3)
A 		11.6
(-0.2)
P 		9.7
(-3)
A 		4
C 17.1
(3)
P 		10.1
(-3)
P 		11.2
(-2.1)
P 		15.7
(1.8)
P 		7
avr 13.7
(3) 		9.8
(-3) 		13.1
(2.1) 		12.9
(1.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 10.9
(0.9)
A 		7.4
(-0.6)
A 		8.7
(-0)
P 		8
(-0.3)
A 		15.6
(3)
A 		1.9
(-3)
A 		14
B 14.7
(-0.7)
P 		20.7
(3)
P 		17.8
(1.2)
P 		14.4
(-0.9)
P 		10.9
(-3)
P 		12
(-2.3)
A 		10
C 17.6
(-0.1)
P 		25.1
(3)
P 		12.1
(-2.3)
A 		22.1
(1.8)
P 		10.5
(-3)
A 		13
(-2)
A 		15
avr 14.4
(0.7) 		17.7
(3) 		12.9
(-0.3) 		14.8
(1) 		12.3
(-0.7) 		9
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18074
Sequence Type Exemplar sequence
Representative Public ID C01C4.2 NCBI
Target Description C01C4.2 /REP_DB=WormBase Gene ID /WP=CE03888 /TR=SW:Q11089 /GB=AAA82348.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076238 NCBI Caenorhabditis elegans C01C4.2 (C01C4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000007731 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3715084:3718287:1 10/11 None
C01C4.2 ENSEMBL cdna:known chromosome:CEL140:X:3715084:3717888:1 gene:C01C4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007726 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3715084-3717889(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01C4.2
Entrez Gene 182065 Entrez gene
SwissProt Q11089 EMBL-EBI
WormBase CE03888 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE68475 Hypothetical protein CBG14274 [Caenorhabditis briggsae] 1.0E-174
blast AAA82348 Hypothetical protein C01C4.2 [Caenorhabditis elegans] ref|NP_508639.1| C01C4.2 [Caenorhabditis elegans] sp|Q11089|YWY2_CAEEL Hypothetical protein C01C4.2 in chromosome X 1.0E-139
blast AAA82348 Hypothetical protein C01C4.2 [Caenorhabditis elegans] ref|NP_508639.1| C01C4.2 [Caenorhabditis elegans] sp|Q11089|YWY2_CAEEL Hypothetical protein C01C4.2 in chromosome X 1.0E-102
blast CAE68475 Hypothetical protein CBG14274 [Caenorhabditis briggsae] 9.0E-55
Sequence
Target Sequence 
>C. ELEGANS:187343_AT
tgtgccgtagtcttggactggccgaagcaaactacgcagacgcactgacaaatcgatttc
gagtatcatacagtaataatactggatatgtcgagatgtcgaaatttattgagtatagaa
cactgccgtccacccccaatacaattcgttctccatcaactccaccaattttctacccga
catatccctccccaaactcaatcataggaactataatcgaacataaaagtgaaattgtca
cagttggcaacaactatttgctggttcttgataatcgcaatcaagcagcaaacgttcttt
catacactccgcgttctgaagctctacaaaaagctgagaaaattttcaatgatcaaatgc
caagtctgcctgttgagcacaaagatattccacaagttttttctcggagcccatcgaatc
tctacaattcgaacaatgagacgccattactacaaaatttccagaagctccctgagtatg
ttatcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCCGTAGTCTTGGACTGGCCGA 41 557 161 Antisense
GGCCGAAGCAAACTACGCAGACGCA 160 541 180 Antisense
TTGAGTATAGAACACTGCCGTCCAC 116 705 269 Antisense
AATACAATTCGTTCTCCATCAACTC 655 171 298 Antisense
CCCTCCCCAAACTCAATCATAGGAA 84 257 346 Antisense
GCAGCAAACGTTCTTTCATACACTC 147 313 445 Antisense
TCCGCGTTCTGAAGCTCTACAAAAA 121 597 468 Antisense
ATGCCAAGTCTGCCTGTTGAGCACA 226 41 517 Antisense
TATTCCACAAGTTTTTTCTCGGAGC 152 665 546 Antisense
GAGACGCCATTACTACAAAATTTCC 115 385 598 Antisense
AAGCTCCCTGAGTATGTTATCACTG 320 151 625 Antisense
Sequence Source Affymetrix Proprietary Database