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[187338_at]

Description C45G9.7 /REP_DB=WormBase Gene ID /WP=CE01858 /TR=SW:Q09506 /GB=AAA62550.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 81      6grp_total > 44      4grp_total > 16      6grp_high1_sub > 03      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 464
1 2 3 4 range
A 197.6
(-3)
P 		290.2
(-1.4)
P 		279.5
(-1.6)
P 		539.3
(3)
P 		342
B 175.1
(-3)
P 		331.2
(-0.2)
P 		360
(0.3)
P 		506.7
(3)
P 		332
C 241.5
(-3)
P 		298.6
(-2.1)
P 		308
(-2)
P 		639.2
(3)
P 		398
avr 204.7
(-3) 		306.7
(-1.3) 		315.8
(-1.1) 		561.7
(3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 236.7
(-1.5)
P 		263.2
(-0.6)
P 		374.5
(3)
P 		283.1
(0)
P 		190.3
(-3)
P 		195.2
(-2.8)
P 		184
B 242.4
(-1.7)
P 		348
(1.1)
P 		417.8
(3)
P 		191.6
(-3)
P 		232
(-1.9)
P 		263.3
(-1.1)
P 		226
C 310.2
(2.3)
P 		324.5
(3)
P 		280.9
(0.9)
P 		208
(-2.6)
P 		200.4
(-3)
P 		215.5
(-2.3)
P 		124
avr 263.1
(-0.8) 		311.9
(1.2) 		357.7
(3) 		227.6
(-2.2) 		207.6
(-3) 		224.7
(-2.3) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 71.9
(0.4)
P 		63
(-3)
P 		73.1
(0.8)
P 		78.9
(3)
P 		16
B 55.8
(-3)
P 		81.8
(-0)
P 		83.4
(0.2)
P 		108
(3)
P 		52
C 79.9
(-3)
P 		85.8
(-1.7)
P 		107.4
(2.9)
P 		107.8
(3)
P 		28
avr 69.2
(-3) 		76.9
(-1.4) 		88
(0.9) 		98.2
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 43.6
(-3)
P 		93.6
(3)
P 		81.6
(1.6)
P 		71.8
(0.4)
P 		57.4
(-1.3)
P 		47.5
(-2.5)
P 		50
B 84.3
(0.1)
P 		115.9
(3)
P 		101.5
(1.7)
P 		50.7
(-3)
P 		94.3
(1)
P 		98.2
(1.4)
P 		65
C 115
(3)
P 		99
(1.7)
P 		71.5
(-0.6)
P 		41.8
(-3)
P 		64.8
(-1.1)
P 		72.1
(-0.5)
P 		73
avr 81
(0.3) 		102.8
(3) 		84.9
(0.8) 		54.8
(-3) 		72.2
(-0.8) 		72.6
(-0.8) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187338_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6432
Sequence Type Exemplar sequence
Representative Public ID C45G9.7 NCBI
Target Description C45G9.7 /REP_DB=WormBase Gene ID /WP=CE01858 /TR=SW:Q09506 /GB=AAA62550.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065670 NCBI Caenorhabditis elegans C45G9.7 (C45G9.7) mRNA, complete cds. 11/11 None
SNAP00000017853 ENSEMBL cdna:SNAP chromosome:CEL140:III:5046249:5047103:-1 11/11 None
GENEFINDER00000017870 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5046249:5047122:-1 11/11 None
C45G9.7 ENSEMBL cdna:known chromosome:CEL140:III:5046131:5047103:-1 gene:C45G9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5046247-5047102(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45G9.7
Entrez Gene 175685 Entrez gene
SwissProt Q09506 EMBL-EBI
WormBase CE01858 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638846_AT dm
DROSGENOME1:153575_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498071 C45G9.7 [Caenorhabditis elegans] gb|AAA62550.1| Hypothetical protein C45G9.7 [Caenorhabditis elegans] sp|Q09506|YQI7_CAEEL Hypothetical protein C45G9.7 in chromosome III 1.0E-66
blast CAE75099 Hypothetical protein CBG23021 [Caenorhabditis briggsae] 4.0E-62
blast EAA11322 ENSANGP00000021842 [Anopheles gambiae str. PEST] ref|XP_315635.2| ENSANGP00000021842 [Anopheles gambiae str. PEST] 3.0E-31
Protein Domains
Database ID Description E-Value
scop a.1.1.Nerve tissue mini-hemoglobin (neural globin) All alpha proteins; Globin-like; Globin-like; Nerve tissue mini-hemoglobin (neural globin) 9.19999980926514
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.4E-24
Sequence
Target Sequence 
>C. ELEGANS:187338_AT
attgatgctcatggacaagtcacaattcgagttggatttaaaattggtggaggaattgat
caagatccaacaaaagcgccattcaaatatccggattctggagtttatatcacaaacgtc
gaatcaggatcgccggcggatgtggctggattgagaaagcatgataagattctgcaggtc
aatggagcagatttcacaatgatgactcatgatcgagctgtgaagtttatcaaacaatca
aaagtacttcatatgcttgttgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGATGCTCATGGACAAGTCACAA 698 3 91 Antisense
GGACAAGTCACAATTCGAGTTGGAT 70 527 103 Antisense
GATCAAGATCCAACAAAAGCGCCAT 655 421 148 Antisense
AACAAAAGCGCCATTCAAATATCCG 455 135 159 Antisense
ATCCGGATTCTGGAGTTTATATCAC 408 39 179 Antisense
AAACGTCGAATCAGGATCGCCGGCG 412 125 204 Antisense
ATCAGGATCGCCGGCGGATGTGGCT 114 27 213 Antisense
GCATGATAAGATTCTGCAGGTCAAT 23 311 249 Antisense
GCAGGTCAATGGAGCAGATTTCACA 319 311 264 Antisense
GATGACTCATGATCGAGCTGTGAAG 140 413 291 Antisense
AAAGTACTTCATATGCTTGTTGCAA 161 123 331 Antisense
Sequence Source Affymetrix Proprietary Database