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[187337_at]

Description C32D5.7 /REP_DB=WormBase Gene ID /WP=CE01847 /TR=SW:Q09267 /GB=AAC46795.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 83      6grp_total > 38      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 389
1 2 3 4 range
A 592
(2.7)
P 		285.9
(-3)
P 		354.9
(-1.7)
P 		607.6
(3)
P 		322
B 674.7
(3)
P 		409.6
(-1.4)
P 		316.8
(-3)
P 		570.6
(1.3)
P 		358
C 573.6
(3)
P 		375.9
(-1.9)
P 		331
(-3)
P 		492.4
(1)
P 		243
avr 613.4
(3) 		357.1
(-2.5) 		334.2
(-3) 		556.9
(1.8) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 454
1 2 3 4 5 6 range
A 692
(3)
P 		522.5
(0.3)
P 		312.7
(-3)
P 		405.2
(-1.5)
P 		519.9
(0.3)
P 		629.9
(2)
P 		379
B 721.6
(3)
P 		470.4
(-0.3)
P 		267.8
(-3)
P 		559
(0.9)
P 		324.5
(-2.3)
P 		603.9
(1.4)
P 		454
C 453.4
(-0.6)
P 		602.9
(3)
P 		376.6
(-2.5)
P 		356.7
(-3)
P 		417.3
(-1.5)
P 		433
(-1.1)
P 		246
avr 622.3
(3) 		531.9
(1.2) 		319
(-3) 		440.3
(-0.6) 		420.6
(-1) 		555.6
(1.7) 		303
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 215.5
(3)
P 		62.1
(-3)
P 		92.8
(-1.8)
P 		88.9
(-2)
P 		153
B 215.2
(3)
P 		101.2
(-1.8)
P 		73.4
(-3)
P 		121.6
(-1)
P 		142
C 189.9
(3)
P 		108.1
(-1.6)
P 		115.4
(-1.2)
P 		83
(-3)
P 		107
avr 206.9
(3) 		90.5
(-3) 		93.9
(-2.8) 		97.8
(-2.6) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 127.6
(0)
P 		185.8
(3)
P 		68.1
(-3)
P 		102.8
(-1.2)
P 		156.9
(1.5)
P 		153.4
(1.3)
P 		118
B 251.1
(3)
P 		156.6
(-0)
P 		65
(-3)
P 		148
(-0.3)
P 		131.8
(-0.8)
P 		225.2
(2.2)
P 		186
C 168.1
(2.2)
P 		184
(3)
P 		95.9
(-1.7)
P 		71.7
(-3)
P 		135
(0.4)
P 		144.9
(0.9)
P 		112
avr 182.3
(3) 		175.5
(2.6) 		76.3
(-3) 		107.5
(-1.2) 		141.2
(0.7) 		174.5
(2.6) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4502
Sequence Type Exemplar sequence
Representative Public ID C32D5.7 NCBI
Target Description C32D5.7 /REP_DB=WormBase Gene ID /WP=CE01847 /TR=SW:Q09267 /GB=AAC46795.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062873 NCBI Caenorhabditis elegans C32D5.7 (C32D5.7) mRNA, complete cds. 11/11 None
SNAP00000026829 ENSEMBL cdna:SNAP chromosome:CEL140:II:6336451:6339093:-1 11/11 None
GENEFINDER00000026837 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6336451:6339093:-1 11/11 None
C32D5.7 ENSEMBL cdna:known chromosome:CEL140:II:6336451:6339504:-1 gene:C32D5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6336447-6339501(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32D5.7
Entrez Gene 174047 Entrez gene
SwissProt Q09267 EMBL-EBI
WormBase CE01847 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46795 Hypothetical protein C32D5.7 [Caenorhabditis elegans] ref|NP_495274.1| C32D5.7 [Caenorhabditis elegans] sp|Q09267|YQD7_CAEEL Hypothetical protein C32D5.7 in chromosome II 0.0
blast CAE59296 Hypothetical protein CBG02631 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495274.1 4 146-168,199-221,261-283,293-315
C32D5.7 4 146-168,199-221,261-283,293-315
SNAP00000026829 4 134-156,187-209,249-271,281-303
GENEFINDER00000026837 4 134-156,187-209,249-271,281-303
Sequence
Target Sequence 
>C. ELEGANS:187337_AT
atgtatcgtgttttcttatgctatggaatctgttcattgatcaactgtgccattattttc
tacatggttggaattcaagattctcttggtgacgttgtcagcacaatattcctttatgtt
tttgatgctgttgttattctctacttcattgcatttccattgacaacagtcatatatcac
ccatatgttcattgctttagaagaagaggcgctcctgctcgattcacactgcctgatgtt
ggacaaagaactcagacatctacactagaaagcaatattagtggtctagaagaagcaatg
ggaaaagctactggcggaactcctcctgttcacagaaatccaagtcctcctgtaattcca
tcattgaatttttcacgacaagatcctcttcgacaaggtcatcgttcaactggctctatt
tcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTATCGTGTTTTCTTATGCTATG 683 47 784 Antisense
GATGCTGTTGTTATTCTCTACTTCA 110 415 907 Antisense
ATTCTCTACTTCATTGCATTTCCAT 322 11 919 Antisense
ATATCACCCATATGTTCATTGCTTT 148 21 957 Antisense
TAGAAGAAGAGGCGCTCCTGCTCGA 449 649 981 Antisense
GATTCACACTGCCTGATGTTGGACA 406 431 1004 Antisense
GGAAAAGCTACTGGCGGAACTCCTC 589 527 1084 Antisense
GGAACTCCTCCTGTTCACAGAAATC 301 529 1099 Antisense
GTCCTCCTGTAATTCCATCATTGAA 78 477 1127 Antisense
TTCACGACAAGATCCTCTTCGACAA 445 687 1155 Antisense
TCGTTCAACTGGCTCTATTTCAACA 101 605 1185 Antisense
Sequence Source Affymetrix Proprietary Database