[Home] | [Total List]

[187336_at]

Description Y110A7A.15 /REP_DB=WormBase Gene ID /WP=CE24120 /TR=Q9N596 /GB=AAF60429.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 48      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 71.2
(-0)
A 		104.4
(2.6)
A 		109.4
(3)
P 		33.4
(-3)
A 		76
B 50.4
(-3)
A 		97.1
(1)
P 		121.3
(3)
P 		110
(2)
P 		71
C 113.9
(-0.3)
A 		83.4
(-3)
P 		150.9
(3)
P 		109.8
(-0.7)
A 		68
avr 78.5
(-3) 		95
(-1) 		127.2
(3) 		84.4
(-2.3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 10.8
(-3)
A 		55.2
(-2.4)
A 		121.7
(-1.4)
P 		213
(-0.1)
P 		306
(1.3)
P 		425.9
(3)
P 		415
B 23.5
(-3)
A 		24.7
(-3)
A 		101.5
(-2)
P 		188
(-0.8)
P 		285.3
(0.5)
P 		472.9
(3)
P 		449
C 29.1
(-3)
A 		60.5
(-2.5)
A 		62.1
(-2.5)
P 		269.6
(0.5)
P 		259.5
(0.4)
P 		441.7
(3)
P 		413
avr 21.1
(-3) 		46.8
(-2.6) 		95.1
(-2) 		223.5
(-0.1) 		283.6
(0.7) 		446.8
(3) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 25.9
(2.3)
A 		22.7
(1.5)
A 		28.6
(3)
P 		4.9
(-3)
A 		24
B 16.1
(-3)
A 		24
(0.9)
P 		28.1
(3)
P 		23.4
(0.6)
P 		12
C 37.7
(0.4)
A 		24
(-2)
P 		52.6
(3)
P 		18.5
(-3)
A 		34
avr 26.6
(0.2) 		23.6
(-0.7) 		36.4
(3) 		15.6
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 2
(-3)
A 		19.6
(-2)
A 		26.5
(-1.6)
P 		54
(0.1)
P 		92.3
(2.3)
P 		103.7
(3)
P 		102
B 8.2
(-3)
A 		8.2
(-3)
A 		24.7
(-2.4)
P 		49.8
(-1.5)
P 		115.9
(0.8)
P 		176.4
(3)
P 		168
C 10.8
(-3)
A 		18.4
(-2.7)
A 		15.8
(-2.8)
P 		54.2
(-1.1)
P 		84
(0.2)
P 		147.9
(3)
P 		137
avr 7
(-3) 		15.4
(-2.6) 		22.3
(-2.3) 		52.7
(-1) 		97.4
(1) 		142.7
(3) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1544
Sequence Type Exemplar sequence
Representative Public ID Y110A7A.15 NCBI
Target Description Y110A7A.15 /REP_DB=WormBase Gene ID /WP=CE24120 /TR=Q9N596 /GB=AAF60429.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059122(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059122 NCBI Caenorhabditis elegans Y110A7A.15a (Y110A7A.15) mRNA, complete cds. 11/11 None
GENEFINDER00000029238 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5110142:5118850:-1 11/11 None
SNAP00000029206 ENSEMBL cdna:SNAP chromosome:CEL140:I:5111379:5113741:-1 11/11 None
Y110A7A.15a ENSEMBL cdna:known chromosome:CEL140:I:5110920:5113755:-1 gene:Y110A7A.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182041 4/11 Cross Hyb Matching Probes None
Y110A7A.15b 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172142 2 1 NM_059122 187336_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5111378-5114080(-) 98.7 100.0
Public Domain and Genome References
Ensembl Y110A7A.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60429 Hypothetical protein Y110A7A.15a [Caenorhabditis elegans] ref|NP_491523.2| Y110A7A.15a [Caenorhabditis elegans] 0.0
blast AAF60430 Hypothetical protein Y110A7A.16 [Caenorhabditis elegans] ref|NP_491524.1| Y110A7A.16 [Caenorhabditis elegans] 0.0
blast CAE65740 Hypothetical protein CBG10825 [Caenorhabditis briggsae] 0.0
blast CAA85278 Hypothetical protein R74.8a [Caenorhabditis elegans] ref|NP_001022738.1| R74.8a [Caenorhabditis elegans] 1.0E-116
blast CAE65733 Hypothetical protein CBG10816 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR006849 EMBL-EBI IKI3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029238 5 1283-1305,1843-1865,1870-1892,1905-1927,1937-1959
Sequence
Target Sequence 
>C. ELEGANS:187336_AT
gacgttggaggacgcggtttcgagctttctggagcagtttccccgagcttcatcgctagt
tatcgttcaactgttgcgatttcggatcttggatgtaataaggtgttcatttgctgctta
gacgacacaaattggaataatatgtcattcaatactcttcgagttctcgaatcgtcacct
gatctgccgatagatcagctcgccaatgaaactggattccgattcgtctccggaatgcaa
ttcgaccaaaatggctatcttctcattggagatgcaaaaggtcattcgatcaaggttaga
attttcaaaaaaagtttttcaagtatatggaaaatttttagattttttttgctgttcgac
actgactacagtttcctgcatcgtatctccagtgattttcctcttccctatatgtcttca
ttccatgtaaacagtaaaggccaagtaattatcctcgatgtgaacgcggaacagaagctt
cactgggtgaagatggagtcgatcgacgaaattcagaaatggttgccaccgaaagctgaa
agacgtcccacgcaaggatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTGGAGGACGCGGTTTCGAGC 453 377 1021 Antisense
TTCGAGCTTTCTGGAGCAGTTTCCC 517 693 1039 Antisense
GCTTCATCGCTAGTTATCGTTCAAC 574 305 1067 Antisense
GGTGTTCATTTGCTGCTTAGACGAC 624 499 1122 Antisense
TCGAGTTCTCGAATCGTCACCTGAT 207 603 1179 Antisense
TCTGCCGATAGATCAGCTCGCCAAT 250 609 1203 Antisense
TGAAACTGGATTCCGATTCGTCTCC 157 573 1227 Antisense
CACTGACTACAGTTTCCTGCATCGT 264 199 1380 Antisense
GCATCGTATCTCCAGTGATTTTCCT 707 309 1398 Antisense
CTTCCCTATATGTCTTCATTCCATG 527 219 1423 Antisense
GAAAGACGTCCCACGCAAGGATTTT 621 357 1558 Antisense
Sequence Source Affymetrix Proprietary Database