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[187335_at]

Description C28F5.1 /REP_DB=WormBase Gene ID /WP=CE01815 /TR=SW:Q09239 /GB=AAC46725.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 8.1
(-3)
A 		22.8
(-1.3)
A 		30
(-0.5)
A 		60.9
(3)
A 		53
B 2.8
(-3)
A 		18.6
(3)
A 		12.6
(0.7)
A 		4.3
(-2.4)
A 		16
C 5.8
(-3)
A 		8.9
(-2.5)
A 		5.5
(-3)
A 		47.3
(3)
A 		42
avr 5.6
(-3) 		16.8
(-0.9) 		16
(-1) 		37.5
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 66.2
(3)
A 		10.5
(-2.6)
A 		34.2
(-0.2)
A 		6.6
(-3)
A 		55.1
(1.9)
A 		36.6
(0)
A 		60
B 7
(-2.5)
A 		32.1
(1.8)
A 		25.1
(0.6)
A 		39.3
(3)
A 		4.2
(-3)
A 		31.6
(1.7)
P 		35
C 4
(-3)
A 		6.3
(-2.3)
A 		5.5
(-2.6)
A 		22.5
(2.6)
A 		24
(3)
A 		20.6
(2)
A 		20
avr 25.7
(1.2) 		16.3
(-3) 		21.6
(-0.6) 		22.8
(-0.1) 		27.8
(2.2) 		29.6
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.9
(-3)
A 		5
(-0.9)
A 		7.8
(1.9)
A 		8.9
(3)
A 		6
B 0.9
(-3)
A 		4.6
(3)
A 		2.9
(0.2)
A 		0.9
(-3)
A 		4
C 1.9
(-3)
A 		2.6
(-2.3)
A 		1.9
(-3)
A 		8
(3)
A 		6
avr 1.9
(-3) 		4.1
(0.3) 		4.2
(0.5) 		5.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 12.2
(1.2)
A 		3.7
(-2.2)
A 		7.5
(-0.7)
A 		1.7
(-3)
A 		16.6
(3)
A 		8.9
(-0.1)
A 		15
B 2.4
(-2.6)
A 		10.7
(2.3)
A 		6.1
(-0.4)
A 		10.4
(2.2)
A 		1.7
(-3)
A 		11.8
(3)
P 		10
C 1.5
(-2.9)
A 		1.9
(-2.5)
A 		1.4
(-3)
A 		4.5
(-0.1)
A 		7.8
(3)
A 		6.9
(2.2)
A 		6
avr 5.4
(-2.4) 		5.4
(-2.4) 		5
(-3) 		5.5
(-2.3) 		8.7
(2.3) 		9.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4963
Sequence Type Exemplar sequence
Representative Public ID C28F5.1 NCBI
Target Description C28F5.1 /REP_DB=WormBase Gene ID /WP=CE01815 /TR=SW:Q09239 /GB=AAC46725.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063170 NCBI Caenorhabditis elegans C28F5.1 (C28F5.1) mRNA, complete cds. 11/11 None
SNAP00000012807 ENSEMBL cdna:SNAP chromosome:CEL140:II:7506124:7506521:1 11/11 None
C28F5.1 ENSEMBL cdna:known chromosome:CEL140:II:7506148:7506521:1 gene:C28F5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012814 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7506144-7506518(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C28F5.1
Entrez Gene 182984 Entrez gene
SwissProt Q09239 EMBL-EBI
WormBase CE01815 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46725 Hypothetical protein C28F5.1 [Caenorhabditis elegans] ref|NP_495571.1| C28F5.1 [Caenorhabditis elegans] sp|Q09239|YQA1_CAEEL Hypothetical protein C28F5.1 in chromosome II 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:187335_AT
gctccaggaattctcccaagtgtaaaaatcgaagctccaattgccaacggagttgttttg
aagaatgagcccatgattcgcgtccagaacaatccgattcccgacgaaagtattgacgtc
aagacatttgtgctctgtgactttaaaacgagagatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCAGGAATTCTCCCAAGTGTAA 638 297 22 Antisense
GAATTCTCCCAAGTGTAAAAATCGA 438 323 29 Antisense
AAAATCGAAGCTCCAATTGCCAACG 358 133 46 Antisense
AGCTCCAATTGCCAACGGAGTTGTT 420 81 54 Antisense
AAGAATGAGCCCATGATTCGCGTCC 179 153 82 Antisense
GATTCGCGTCCAGAACAATCCGATT 507 431 96 Antisense
TCCAGAACAATCCGATTCCCGACGA 119 587 104 Antisense
TCCGATTCCCGACGAAAGTATTGAC 614 593 114 Antisense
GACGTCAAGACATTTGTGCTCTGTG 695 377 136 Antisense
CAAGACATTTGTGCTCTGTGACTTT 459 185 141 Antisense
CTGTGACTTTAAAACGAGAGATCGT 704 233 156 Antisense
Sequence Source Affymetrix Proprietary Database