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[187334_at]

Description B0228.9 /REP_DB=WormBase Gene ID /WP=CE01749 /TR=SW:Q09439 /GB=AAC38812.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.3
(-2.2)
A 		1
(-3)
A 		3.2
(3)
A 		1.8
(-0.8)
A 		2
B 3.1
(-1.1)
A 		5
(3)
A 		2.2
(-3)
A 		4.5
(1.9)
A 		3
C 1.3
(-3)
A 		1.4
(-2.8)
A 		3.5
(0.8)
A 		4.8
(3)
A 		4
avr 1.9
(-3) 		2.5
(-1) 		3
(0.7) 		3.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.2
(-1.8)
A 		0.7
(-3)
A 		1.7
(-2.2)
A 		1.8
(-2.1)
A 		8.3
(3)
A 		3.8
(-0.6)
A 		8
B 1.8
(-2.3)
A 		2.5
(-2)
A 		9.4
(1.8)
A 		11.5
(3)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		11
C 1.6
(-2.8)
A 		27.6
(3)
A 		2.9
(-2.6)
A 		4.6
(-2.2)
A 		1.9
(-2.8)
A 		0.9
(-3)
A 		27
avr 1.9
(-2.9) 		10.3
(3) 		4.7
(-1) 		6
(-0) 		3.7
(-1.7) 		1.8
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.5
(-0)
A 		0.2
(-3)
A 		0.8
(3)
A 		0.3
(-2)
A 		1
B 1
(1.3)
A 		1.2
(3)
A 		0.5
(-3)
A 		1
(1.3)
A 		1
C 0.4
(-3)
A 		0.4
(-3)
A 		1.2
(3)
A 		0.8
(0)
A 		1
avr 0.6
(-3) 		0.6
(-3) 		0.8
(3) 		0.7
(-0) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.4
(-2.7)
A 		0.3
(-3)
A 		0.4
(-2.7)
A 		0.5
(-2.5)
A 		2.5
(3)
A 		0.9
(-1.4)
A 		2
B 0.6
(-2.1)
A 		0.8
(-1.7)
A 		2.3
(1.5)
A 		3
(3)
A 		0.4
(-2.6)
A 		0.2
(-3)
A 		3
C 0.6
(-2.8)
A 		8.4
(3)
A 		0.7
(-2.7)
A 		0.9
(-2.6)
A 		0.6
(-2.8)
A 		0.3
(-3)
A 		8
avr 0.5
(-3) 		3.2
(3) 		1.1
(-1.7) 		1.5
(-0.8) 		1.2
(-1.4) 		0.5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187334_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4128
Sequence Type Exemplar sequence
Representative Public ID B0228.9 NCBI
Target Description B0228.9 /REP_DB=WormBase Gene ID /WP=CE01749 /TR=SW:Q09439 /GB=AAC38812.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063230(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063230 NCBI Caenorhabditis elegans B0228.9 (B0228.9) mRNA, complete cds. 11/11 None
B0228.9 ENSEMBL cdna:known chromosome:CEL140:II:7762276:7763524:-1 gene:B0228.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042204 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7762272-7763521(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0228.9
Entrez Gene 181865 Entrez gene
SwissProt Q09439 EMBL-EBI
WormBase CE01749 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC38812 Hypothetical protein B0228.9 [Caenorhabditis elegans] ref|NP_495631.1| B0228.9 [Caenorhabditis elegans] sp|Q09439|YP79_CAEEL Hypothetical protein B0228.9 in chromosome II 0.0
blast CAE67464 Hypothetical protein CBG12965 [Caenorhabditis briggsae] 1.0E-28
blast CAE67336 Hypothetical protein CBG12798 [Caenorhabditis briggsae] 3.0E-12
Sequence
Target Sequence 
>C. ELEGANS:187334_AT
tcagagccgttggaggatgttgataactatttagaacgagttcgaacaaaattatcaagc
ggattattcttacctgatggagttgatcaaactttgcaaaactttgaagaatttggggat
tggataacagatgatgcgattattgtagtttgtgatgaacaaaaaatggataaaaatgag
tttataaaatatatgagtactagatatcatcatattcgaaaatattcgaacaatcaattt
gatcatgtaaaaaataatcaagattttgaaataactttctctacgacttggacagcagac
aatactacacaattccgggacacatatattttccgggttaaaaaggcagaagattatttc
ccggaaaatgatcgtttgtaccttctatggaaaatttactgggttacaaagagatgcact
gtagatgtgacacagtaccctgcagttctagatggatctgtcatactgggagaagtgaat
aaaagattttgtggaatgattgatggtgaaaattgggatgtgtatcaatcattcttggac
ctatttgatccaaatgatactaaatggggctcttgtgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGAGCCGTTGGAGGATGTTGATA 326 623 400 Antisense
AGCGGATTATTCTTACCTGATGGAG 652 77 457 Antisense
AACTTTCTCTACGACTTGGACAGCA 363 139 672 Antisense
AATACTACACAATTCCGGGACACAT 182 173 700 Antisense
AATGATCGTTTGTACCTTCTATGGA 247 165 766 Antisense
AGATGTGACACAGTACCCTGCAGTT 447 67 822 Antisense
CAGTACCCTGCAGTTCTAGATGGAT 522 207 832 Antisense
TAGATGGATCTGTCATACTGGGAGA 536 653 848 Antisense
TGGGATGTGTATCAATCATTCTTGG 344 553 913 Antisense
ATCATTCTTGGACCTATTTGATCCA 333 31 927 Antisense
GATACTAAATGGGGCTCTTGTGTTG 481 423 955 Antisense
Sequence Source Affymetrix Proprietary Database