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[187333_at]

Description W02B3.3 /REP_DB=WormBase Gene ID /WP=CE02075 /TR=SW:Q09340 /GB=AAA64321.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 26.7
(-0.9)
A 		38.7
(0.7)
A 		55.7
(3)
A 		11.3
(-3)
A 		44
B 26.4
(1.1)
A 		9.9
(-3)
A 		34.1
(3)
A 		20.6
(-0.3)
A 		24
C 33.2
(3)
A 		11.1
(-2.7)
A 		16
(-1.4)
A 		9.8
(-3)
A 		23
avr 28.8
(1.2) 		19.9
(-1.3) 		35.3
(3) 		13.9
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 55.3
(3)
A 		8
(-3)
A 		10.7
(-2.7)
A 		9.5
(-2.8)
A 		18.3
(-1.7)
A 		34.3
(0.3)
A 		47
B 35.8
(0.5)
A 		20.4
(-1.3)
A 		32.9
(0.2)
A 		56.6
(3)
A 		20.4
(-1.3)
A 		6.1
(-3)
A 		51
C 37.3
(1.5)
A 		26.4
(-0.1)
A 		7.4
(-3)
A 		47.3
(3)
A 		14.4
(-1.9)
A 		21.7
(-0.8)
A 		40
avr 42.8
(3) 		18.3
(-2.7) 		17
(-3) 		37.8
(1.8) 		17.7
(-2.8) 		20.7
(-2.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.7
(0.7)
A 		8.4
(0.1)
A 		14.6
(3)
A 		1.7
(-3)
A 		13
B 8.4
(3)
A 		2.5
(-3)
A 		7.9
(2.5)
A 		4.4
(-1.1)
A 		6
C 11
(3)
A 		3.2
(-2)
A 		5.6
(-0.5)
A 		1.7
(-3)
A 		9
avr 9.7
(3) 		4.7
(-1.2) 		9.4
(2.7) 		2.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.2
(3)
A 		2.9
(-2.5)
A 		2.3
(-3)
A 		2.4
(-2.9)
A 		5.5
(-0.6)
A 		8.3
(1.6)
A 		8
B 12.5
(1.8)
A 		6.8
(-0.9)
A 		8
(-0.3)
A 		15
(3)
A 		8.3
(-0.2)
A 		2.3
(-3)
A 		13
C 13.8
(3)
A 		8.1
(0.1)
A 		1.9
(-3)
A 		9.5
(0.8)
A 		4.7
(-1.6)
A 		7.3
(-0.3)
A 		12
avr 12.2
(3) 		5.9
(-1.7) 		4.1
(-3) 		9
(0.6) 		6.2
(-1.4) 		6
(-1.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8216
Sequence Type Exemplar sequence
Representative Public ID W02B3.3 NCBI
Target Description W02B3.3 /REP_DB=WormBase Gene ID /WP=CE02075 /TR=SW:Q09340 /GB=AAA64321.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064833 NCBI Caenorhabditis elegans W02B3.3 (W02B3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000011600 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:668093:668428:-1 11/11 None
W02B3.3 ENSEMBL cdna:known chromosome:CEL140:III:668093:668428:-1 gene:W02B3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011589 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:668092-668428(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02B3.3
Entrez Gene 189103 Entrez gene
SwissProt Q09340 EMBL-EBI
WormBase CE02075 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA64321 Hypothetical protein W02B3.3 [Caenorhabditis elegans] ref|NP_497234.1| W02B3.3 [Caenorhabditis elegans] sp|Q09340|YR23_CAEEL Hypothetical protein W02B3.3 in chromosome III 2.0E-50
Sequence
Target Sequence 
>C. ELEGANS:187333_AT
aaggaggcacacatgctcaaagagtgtccgacacacacttgcgctgcctcccttttctgg
caagaaaggagagagagactaactttgacacctccatgctaagcgcaggaatgaatcaat
tactagaccttgaggactacatgttccagcggattcagggaccagaagagccctcagcag
aaacatcagtcggagggttttgtgacgatcggctctgtcagtatgggaacatgttttcag
gttacggggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAGGCACACATGCTCAAAGAGT 569 157 65 Antisense
AAGAGTGTCCGACACACACTTGCGC 395 155 84 Antisense
TGCCTCCCTTTTCTGGCAAGAAAGG 655 583 109 Antisense
GAGAGACTAACTTTGACACCTCCAT 182 395 137 Antisense
ACACCTCCATGCTAAGCGCAGGAAT 29 109 152 Antisense
GACCTTGAGGACTACATGTTCCAGC 539 383 190 Antisense
ATGTTCCAGCGGATTCAGGGACCAG 342 47 205 Antisense
AGAAGAGCCCTCAGCAGAAACATCA 16 75 228 Antisense
GGAGGGTTTTGTGACGATCGGCTCT 267 515 256 Antisense
GACGATCGGCTCTGTCAGTATGGGA 260 379 268 Antisense
GAACATGTTTTCAGGTTACGGGGCA 381 141 291 Antisense
Sequence Source Affymetrix Proprietary Database