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[187332_s_at]

Description C37C3.2 /REP_DB=WormBase Gene ID /WP=CE27367 /TR=SW:Q22918 /GB=AAC25859.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 15      4grp_highest_8_8 > 53      4grp_high_8_8 > 08      6grp_highest_nonorm > 13      6grp_total > 05      4grp_total > 23      6grp_highest_sub > 01_02      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1785
1 2 3 4 range
A 3586.6
(2.6)
P 		2342
(-3)
P 		2418.8
(-2.7)
P 		3673.2
(3)
P 		1331
B 3772.3
(3)
P 		2139.5
(-2.5)
P 		1987.6
(-3)
P 		3041.8
(0.5)
P 		1785
C 3422.6
(3)
P 		2380.4
(-3)
P 		2728.4
(-1)
P 		2603.9
(-1.7)
P 		1042
avr 3593.8
(3) 		2287.3
(-3) 		2378.3
(-2.6) 		3106.3
(0.8) 		1307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2646
1 2 3 4 5 6 range
A 4356.4
(3)
P 		2797.2
(-0.8)
P 		2335.1
(-1.9)
P 		1862.9
(-3)
P 		2566.9
(-1.3)
P 		2013.8
(-2.6)
P 		2494
B 3205.2
(0.4)
P 		4345
(3)
P 		1710.3
(-3)
P 		2253.2
(-1.8)
P 		2622.4
(-0.9)
P 		1965.8
(-2.4)
P 		2635
C 3259.5
(0.9)
P 		3894.8
(3)
P 		2165.2
(-2.7)
P 		2221
(-2.5)
P 		2112.6
(-2.9)
P 		2071.8
(-3)
P 		1823
avr 3607
(2.7) 		3679
(3) 		2070.2
(-2.8) 		2112.4
(-2.7) 		2434
(-1.5) 		2017.1
(-3) 		1662
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 867
1 2 3 4 range
A 1305.9
(3)
P 		508.4
(-3)
P 		632.3
(-2.1)
P 		537.7
(-2.8)
P 		798
B 1203
(3)
P 		528.4
(-2.5)
P 		460.6
(-3)
P 		648.2
(-1.5)
P 		742
C 1133
(3)
P 		684.4
(-0.9)
P 		950.9
(1.4)
P 		439.1
(-3)
P 		694
avr 1214
(3) 		573.7
(-2.7) 		681.3
(-1.8) 		541.7
(-3) 		672

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1031
1 2 3 4 5 6 range
A 803.1
(0.8)
P 		994.8
(3)
P 		508.5
(-2.6)
P 		472.5
(-3)
P 		774.6
(0.5)
P 		490.3
(-2.8)
P 		522
B 1115.3
(1.1)
P 		1446.3
(3)
P 		415.3
(-3)
P 		596.8
(-1.9)
P 		1065.5
(0.8)
P 		733
(-1.2)
P 		1031
C 1208.2
(3)
P 		1188.4
(2.8)
P 		551.1
(-2.2)
P 		446.7
(-3)
P 		683.6
(-1.1)
P 		693.5
(-1.1)
P 		762
avr 1042.2
(1.6) 		1209.8
(3) 		491.6
(-3) 		505.3
(-2.9) 		841.2
(-0.1) 		638.9
(-1.8) 		718
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187332_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12398
Sequence Type Exemplar sequence
Representative Public ID C37C3.2 NCBI
Target Description C37C3.2 /REP_DB=WormBase Gene ID /WP=CE27367 /TR=SW:Q22918 /GB=AAC25859.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171932(9), NM_171488(11), NM_072623(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171932 NCBI Caenorhabditis elegans C37C3.2b (C37C3.2) mRNA, complete cds. 9/11 None
NM_171488 NCBI Caenorhabditis elegans C37C3.2a (C37C3.2) mRNA, complete cds. 11/11 None
NM_072623 NCBI Caenorhabditis elegans C37C3.2c (C37C3.2) mRNA, complete cds. 9/11 None
SNAP00000006081 ENSEMBL cdna:SNAP chromosome:CEL140:V:7858573:7860264:1 11/11 None
GENEFINDER00000006088 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7858573:7860264:1 11/11 None
C37C3.2b.3 ENSEMBL cdna:known chromosome:CEL140:V:7857583:7860569:1 gene:C37C3.2 9/11 None
C37C3.2b.2 ENSEMBL cdna:known chromosome:CEL140:V:7857585:7860569:1 gene:C37C3.2 9/11 None
C37C3.2b.1 ENSEMBL cdna:known chromosome:CEL140:V:7857585:7860569:1 gene:C37C3.2 9/11 None
C37C3.2b.4 ENSEMBL cdna:known chromosome:CEL140:V:7857585:7860569:1 gene:C37C3.2 9/11 None
C37C3.2a ENSEMBL cdna:known chromosome:CEL140:V:7858573:7860514:1 gene:C37C3.2 11/11 None
C37C3.2c ENSEMBL cdna:known chromosome:CEL140:V:7858573:7860508:1 gene:C37C3.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7858573-7860265(+) 100.0 100.0
Public Domain and Genome References
Ensembl C37C3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL16313 Hypothetical protein C37C3.2b [Caenorhabditis elegans] ref|NP_741573.1| C37C3.2b [Caenorhabditis elegans] 0.0
blast AAC25859 Hypothetical protein C37C3.2a [Caenorhabditis elegans] ref|NP_741572.1| C37C3.2a [Caenorhabditis elegans] sp|Q22918|IF5_CAEEL Eukaryotic translation initiation factor 5 (eIF-5) 0.0
blast T34401 hypothetical protein C37C3.2 - Caenorhabditis elegans 0.0
blast AAN84849 Hypothetical protein C37C3.2c [Caenorhabditis elegans] ref|NP_505024.2| C37C3.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002735 EMBL-EBI Translation initiation factor IF5 3.9E-81
Pfam IPR003307 EMBL-EBI eIF4-gamma/eIF5/eIF2-epsilon 3.3E-30
Pfam IPR003307 EMBL-EBI eIF4-gamma/eIF5/eIF2-epsilon 2.2E-38
Pfam IPR003307 EMBL-EBI eIF4-gamma/eIF5/eIF2-epsilon 2.5E-35
Sequence
Target Sequence 
>C. ELEGANS:187332_S_AT
gatgccaagggacaaactgctctacgtgacgaagctgagagacttgagctgaagcaaaaa
gcatctctccttctcgcgaacgtttttcttgatgagaaagtaatcactgacaaacaaatc
agcaaacaccgcaatcttctgcttcgcttcacgttgaatgacaagaaagctcaaagatac
ctgttgggaggagttgagcaagtaattcacaaacatgaagcggaacttctgtctaaatca
gctcacatcattaagtcattgtatgatgaagatgtctgcgaagaggattcgcttatttca
tggggagagaagccgtcgagtaagtatgtctccaaatcttttgccaagaagattattgag
aactctcaaccagtgctcaactggctgaaagaagcggaagaagaaaccgaagaagagtcc
gacgatgagattgcgttcggaggagacgtcaaggagagtgaattccttcgtcaacagaag
gagaaggctgctagagaagctcagcaaaaatcagccaaggctacaaacggcaatgctgct
gctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCCAAGGGACAAACTGCTCTAC 438 415 748 Antisense
GAAGCAAAAAGCATCTCTCCTTCTC 320 341 798 Antisense
CTTCTCGCGAACGTTTTTCTTGATG 647 219 817 Antisense
AGCAAACACCGCAATCTTCTGCTTC 285 77 868 Antisense
TTCTGCTTCGCTTCACGTTGAATGA 88 695 884 Antisense
GGAACTTCTGTCTAAATCAGCTCAC 508 529 969 Antisense
GAGGATTCGCTTATTTCATGGGGAG 684 401 1030 Antisense
GTATGTCTCCAAATCTTTTGCCAAG 494 455 1071 Antisense
TGAGAACTCTCAACCAGTGCTCAAC 352 569 1104 Antisense
GGAGAGTGAATTCCTTCGTCAACAG 184 517 1200 Antisense
TACAAACGGCAATGCTGCTGCTGCA 335 643 1269 Antisense
Sequence Source Affymetrix Proprietary Database