[Home] | [Total List]

[187331_at]

Description F25B5.5 /REP_DB=WormBase Gene ID /WP=CE01922 /TR=SW:Q09316 /GB=AAC46526.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 84      6grp_total > 49      4grp_total > 07      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 682.2
(3)
P 		443.8
(-3)
P 		574.7
(0.3)
P 		549.8
(-0.3)
P 		238
B 705.7
(3)
P 		437.4
(-3)
P 		515.3
(-1.3)
P 		696.9
(2.8)
P 		268
C 504.1
(-1.9)
P 		484
(-3)
P 		597.8
(3)
P 		568.7
(1.5)
P 		114
avr 630.7
(3) 		455.1
(-3) 		562.6
(0.7) 		605.1
(2.1) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 573.4
(0.3)
P 		470.5
(-1.1)
P 		328.2
(-3)
P 		578.6
(0.4)
P 		547.9
(-0)
P 		774.4
(3)
P 		446
B 588.6
(2.6)
P 		577.1
(2.4)
P 		286.7
(-3)
P 		443.3
(-0.1)
P 		545.3
(1.8)
P 		607.9
(3)
P 		321
C 609.1
(2.9)
P 		610.7
(3)
P 		603
(2.7)
P 		437.9
(-3)
P 		542.4
(0.6)
P 		596.3
(2.5)
P 		173
avr 590.4
(1.4) 		552.8
(0.5) 		406
(-3) 		486.6
(-1.1) 		545.2
(0.3) 		659.5
(3) 		254
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 248.4
(3)
P 		96.3
(-2.4)
P 		150.2
(-0.5)
P 		80.5
(-3)
P 		168
B 225
(3)
P 		108
(-3)
P 		119.4
(-2.4)
P 		148.5
(-0.9)
P 		117
C 166.9
(0.8)
P 		139.2
(-0.7)
P 		208.4
(3)
P 		95.9
(-3)
P 		113
avr 213.4
(3) 		114.5
(-2.6) 		159.3
(-0.1) 		108.3
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 105.7
(-1.2)
P 		167.3
(1.9)
P 		71.5
(-3)
P 		146.7
(0.9)
P 		165.3
(1.8)
P 		188.6
(3)
P 		117
B 204.8
(2.2)
P 		192.1
(1.7)
P 		69.6
(-3)
P 		117.4
(-1.2)
P 		221.5
(2.8)
P 		226.7
(3)
P 		157
C 225.8
(3)
P 		186.3
(1.3)
P 		153.5
(-0.2)
P 		88.1
(-3)
P 		175.5
(0.8)
P 		199.6
(1.9)
P 		138
avr 178.8
(1.5) 		181.9
(1.7) 		98.2
(-3) 		117.4
(-1.9) 		187.4
(2) 		205
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187331_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6534
Sequence Type Exemplar sequence
Representative Public ID F25B5.5 NCBI
Target Description F25B5.5 /REP_DB=WormBase Gene ID /WP=CE01922 /TR=SW:Q09316 /GB=AAC46526.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065889 NCBI Caenorhabditis elegans F25B5.5 (F25B5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000007795 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5943846:5946067:-1 11/11 None
SNAP00000007783 ENSEMBL cdna:SNAP chromosome:CEL140:III:5943863:5946067:-1 11/11 None
F25B5.5.1 ENSEMBL cdna:known chromosome:CEL140:III:5943773:5946071:-1 gene:F25B5.5 11/11 None
F25B5.5.2 ENSEMBL cdna:known chromosome:CEL140:III:5943773:5946072:-1 gene:F25B5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5943861-5946066(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F25B5.5
Entrez Gene 175841 Entrez gene
SwissProt Q09316 EMBL-EBI
WormBase CE01922 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246237_AT radical SAM domain-containing protein / TRAM domain-containing protein at
CANINE:1604497_AT similar to CDK5 regulatory subunit associated protein 1 isoform a cfa
CANINE_2:CFA.637.1.A1_AT similar to CDK5 regulatory subunit associated protein 1 isoform a cfa
CANINE_2:CFAAFFX.11982.1.S1_S_AT similar to CDK5 regulatory subunit associated protein 1 isoform a cfa
DROSOPHILA_2:1628790_AT dm
DROSGENOME1:149631_AT dm
CHICKEN:GGAAFFX.20221.1.S1_AT CDK5 regulatory subunit associated protein 1 gga
CHICKEN:GGAAFFX.4190.2.S1_S_AT CDK5 regulatory subunit associated protein 1 gga
HU35KSUBA:RC_AA122217_AT CDK5 regulatory subunit associated protein 1 hs
HU35KSUBB:RC_R93802_AT CDK5 regulatory subunit associated protein 1 hs
HG-U133A:218315_S_AT CDK5 regulatory subunit associated protein 1 hs
HG-U133_PLUS_2:218315_S_AT CDK5 regulatory subunit associated protein 1 hs
HG-FOCUS:218315_S_AT CDK5 regulatory subunit associated protein 1 hs
HG-U133A_2:218315_S_AT CDK5 regulatory subunit associated protein 1 hs
U133_X3P:G7705484_3P_A_AT CDK5 regulatory subunit associated protein 1 hs
HG-U95B:53385_AT CDK5 regulatory subunit associated protein 1 hs
MG-U74CV2:166208_AT CDK5 regulatory subunit associated protein 1 mm
MOE430A:1448626_AT CDK5 regulatory subunit associated protein 1 mm
MOUSE430A_2:1448626_AT CDK5 regulatory subunit associated protein 1 mm
MOUSE430_2:1448626_AT CDK5 regulatory subunit associated protein 1 mm
MU19KSUBA:TC21932_AT CDK5 regulatory subunit associated protein 1, mRNA (cDNA clone MGC:35699 IMAGE:3666341) mm
RG-U34C:RC_AI175098_AT CDK5 regulatory subunit associated protein 1 rn
RAE230A:1388053_AT CDK5 regulatory subunit associated protein 1 rn
RAT230_2:1388053_AT CDK5 regulatory subunit associated protein 1 rn
RG-U34C:RC_AA818609_AT CDK5 regulatory subunit associated protein 1 rn
Protein Similarities
Method ID Description E-Value
blast NP_498290 F25B5.5 [Caenorhabditis elegans] gb|AAC46526.1| Hypothetical protein F25B5.5 [Caenorhabditis elegans] sp|Q09316|CK5P1_CAEEL CDK5RAP1-like protein 0.0
blast CAE64349 Hypothetical protein CBG09036 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005839 EMBL-EBI Protein of unknown function UPF0004 5.1E-48
Pfam IPR007197 EMBL-EBI Radical SAM 4.3E-26
Pfam IPR002792 EMBL-EBI Deoxyribonuclease/rho motif-related TRAM 5.7E-18
Sequence
Target Sequence 
>C. ELEGANS:187331_AT
aaaggatttcccgatgcagttgatcgagcttattgcatcccgtccaaatctctgcaaaca
acttcatcttccagcacaaagtggagatgatgagacattggaacggatggaaagaggata
cacaagagatctgtatttgagattagttgatgatattagacatgttttaccaagcgtctc
tctgacaagtgacttcattgccggattctgtggagaaactgaacaagctcatcagaacac
actttccctcattcgagccgttcgttattcattctgcttcgttttcccctacagtatgcg
tggaaaaacgcgagcacatcatcggttaacagacgatgttccagaagatgtaaaagcaag
aagacatttagatttgactactgtatttcgggaagaagcattgaaattgaaccaagcgct
tatcgggtcggaacagacggttttgttggaaggaaagtcaaaaagggatgcatcattttc
acatggaaggatcgatggtggtgtgaaagcagtgttcgacaattcgaaactctgtttgga
acctggtcaatatgcaaagattctgatcaccgacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGATTTCCCGATGCAGTTGATC 627 121 1032 Antisense
TTGATCGAGCTTATTGCATCCCGTC 200 707 1051 Antisense
CCGTCCAAATCTCTGCAAACAACTT 398 265 1071 Antisense
AAGCGTCTCTCTGACAAGTGACTTC 111 151 1203 Antisense
GACTTCATTGCCGGATTCTGTGGAG 182 371 1222 Antisense
CAAGCTCATCAGAACACACTTTCCC 87 187 1255 Antisense
TCGAGCCGTTCGTTATTCATTCTGC 224 603 1284 Antisense
CGTTTTCCCCTACAGTATGCGTGGA 502 245 1311 Antisense
GAACCAAGCGCTTATCGGGTCGGAA 39 345 1440 Antisense
GAAACTCTGTTTGGAACCTGGTCAA 169 357 1557 Antisense
TGCAAAGATTCTGATCACCGACGCC 398 577 1584 Antisense
Sequence Source Affymetrix Proprietary Database